{"id":"https://openalex.org/W2107948568","doi":"https://doi.org/10.1093/nar/gki129","title":"SpliceInfo: an information repository for mRNA alternative splicing in human genome","display_name":"SpliceInfo: an information repository for mRNA alternative splicing in human genome","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2107948568","doi":"https://doi.org/10.1093/nar/gki129","mag":"2107948568","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608290"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki129","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D80/7622484/gki129.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D80/7622484/gki129.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076407116","display_name":"Haidong Huang","orcid":"https://orcid.org/0000-0003-3755-0623"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"H.-D. Huang","raw_affiliation_strings":["Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Hsin-Chu 300, Taiwan","Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao-Tung University, Hsin-Chu 300, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao Tung University, Hsin-Chu 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Department of Biological Science and Technology, Institute of Bioinformatics, National Chiao-Tung University, Hsin-Chu 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5076407116"],"corresponding_institution_ids":["https://openalex.org/I148366613"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":2.0357,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.86018933,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"33","issue":"Database issue","first_page":"D80","last_page":"D85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.782030463218689},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.7784857153892517},{"id":"https://openalex.org/keywords/exonic-splicing-enhancer","display_name":"Exonic splicing enhancer","score":0.7698195576667786},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.6854886412620544},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.6490865349769592},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.6199464201927185},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.619841456413269},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.591465175151825},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.5463923811912537},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.5395442843437195},{"id":"https://openalex.org/keywords/exon-skipping","display_name":"Exon skipping","score":0.4772320091724396},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.47579726576805115},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46451395750045776},{"id":"https://openalex.org/keywords/sr-protein","display_name":"SR protein","score":0.41546571254730225},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.1797632873058319},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11993545293807983}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.782030463218689},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.7784857153892517},{"id":"https://openalex.org/C42576000","wikidata":"https://www.wikidata.org/wiki/Q5420618","display_name":"Exonic splicing enhancer","level":5,"score":0.7698195576667786},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.6854886412620544},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6490865349769592},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.6199464201927185},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.619841456413269},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.591465175151825},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.5463923811912537},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.5395442843437195},{"id":"https://openalex.org/C2778776201","wikidata":"https://www.wikidata.org/wiki/Q3474283","display_name":"Exon skipping","level":5,"score":0.4772320091724396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47579726576805115},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46451395750045776},{"id":"https://openalex.org/C10447831","wikidata":"https://www.wikidata.org/wiki/Q7392918","display_name":"SR protein","level":5,"score":0.41546571254730225},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.1797632873058319},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11993545293807983}],"mesh":[{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gki129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki129","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D80/7622484/gki129.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608290","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608290","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.284.8194","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.284.8194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/4e/fe/Nucleic_Acids_Res_2005_Jan_1_33(Database_Issue)_D80-D85.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.958.8102","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.958.8102","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/33/suppl_1/D80.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:163570","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC540083","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:540083","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540083","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki129","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D80/7622484/gki129.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W1592870802","https://openalex.org/W1994154030","https://openalex.org/W1998300401","https://openalex.org/W2002183064","https://openalex.org/W2057306271","https://openalex.org/W2063318299","https://openalex.org/W2104565621","https://openalex.org/W2108401170","https://openalex.org/W2112118427","https://openalex.org/W2129682060","https://openalex.org/W2141157874","https://openalex.org/W2143176671","https://openalex.org/W2148834813","https://openalex.org/W2158266834","https://openalex.org/W2168564978","https://openalex.org/W2168822131","https://openalex.org/W4248242635"],"related_works":["https://openalex.org/W2103521510","https://openalex.org/W2052498125","https://openalex.org/W1486506403","https://openalex.org/W2094867951","https://openalex.org/W1581360631","https://openalex.org/W2559182124","https://openalex.org/W2109063364","https://openalex.org/W3012654451","https://openalex.org/W2560114214","https://openalex.org/W4255988127"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"an":[3],"information":[4],"repository":[5],"named":[6],"SpliceInfo":[7],"to":[8,125,151,156],"collect":[9],"the":[10,13,39,57,61,63,69,73,77,80,171,174],"occurrences":[11],"of":[12,51,60,71,99,117,173,177],"four":[14],"major":[15],"alternative-splicing":[16],"(AS)":[17],"modes":[18],"in":[19,170],"human":[20],"genome;":[21],"these":[22],"include":[23],"exon":[24],"skipping,":[25],"5'-alternative":[26],"splicing,":[27],"3'-alternative":[28],"splicing":[29,105,109,158],"and":[30,41,79,107,121,136,160],"intron":[31],"retention.":[32],"The":[33,181],"dataset":[34],"is":[35,91,144,184],"derived":[36],"by":[37,67,95],"comparing":[38],"nucleotide":[40],"protein":[42,64],"sequences":[43],"available":[44,186],"for":[45,49,86],"a":[46,96,115,131,163],"given":[47],"gene":[48],"evidence":[50],"AS.":[52],"Additional":[53],"features":[54],"such":[55,102,178],"as":[56,103],"tissue":[58],"specificity":[59],"mRNA,":[62],"domain":[65],"contained":[66,75],"exons,":[68,72,78],"GC-ratio":[70],"repeats":[74],"within":[76,130],"Gene":[81],"Ontology":[82],"are":[83],"annotated":[84],"computationally":[85],"each":[87],"exonic":[88,104,108,133],"region":[89],"that":[90],"alternatively":[92],"spliced.":[93],"Motivated":[94],"previous":[97],"investigation":[98],"AS-related":[100],"motifs":[101,119],"enhancer":[106],"silencer,":[110],"this":[111,122],"resource":[112,183],"also":[113],"provides":[114],"means":[116],"identifying":[118],"candidates":[120,154],"should":[123],"help":[124,169],"identify":[126,152],"potential":[127],"regulatory":[128,179],"mechanisms":[129],"particular":[132],"sequence":[134,141],"set":[135],"its":[137],"two":[138],"flanking":[139],"intronic":[140],"sets.":[142],"This":[143],"carried":[145],"out":[146],"using":[147],"motif":[148,153],"discovery":[149],"tools":[150],"related":[155],"alternative":[157],"regulation":[159],"together":[161],"with":[162],"secondary":[164],"structure":[165],"prediction":[166],"tool,":[167],"will":[168],"identification":[172],"structural":[175],"properties":[176],"motifs.":[180],"integrated":[182],"now":[185],"on":[187],"http://SpliceInfo.mbc.NCTU.edu.tw/.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
