{"id":"https://openalex.org/W2036557617","doi":"https://doi.org/10.1093/nar/gki117","title":"Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues","display_name":"Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2036557617","doi":"https://doi.org/10.1093/nar/gki117","mag":"2036557617","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608255"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki117","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D533/7622345/gki117.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D533/7622345/gki117.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103518505","display_name":"Kikuya Kato","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151107","display_name":"Osaka International Cancer Institute","ror":"https://ror.org/05xvwhv53","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210151107"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"K. Kato","raw_affiliation_strings":["Osaka Medical Center for Cancer and Cardiovascular Diseases, 1-3-2 Nakamichi, Higashinari-ku, Osaka 537-8511, Japan. katou-ki@mc.pref.osaka.jp","Osaka Medical Center for Cancer and Cardiovascular Diseases, 1-3-2 Nakamichi, Higashinari-ku, Osaka 537-8511, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Osaka Medical Center for Cancer and Cardiovascular Diseases, 1-3-2 Nakamichi, Higashinari-ku, Osaka 537-8511, Japan. katou-ki@mc.pref.osaka.jp","institution_ids":["https://openalex.org/I4210151107"]},{"raw_affiliation_string":"Osaka Medical Center for Cancer and Cardiovascular Diseases, 1-3-2 Nakamichi, Higashinari-ku, Osaka 537-8511, Japan","institution_ids":["https://openalex.org/I4210151107"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5103518505"],"corresponding_institution_ids":["https://openalex.org/I4210151107"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.5871,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.81440352,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"33","issue":"Database issue","first_page":"D533","last_page":"D536"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6890345215797424},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5827099680900574},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5647389888763428},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5445178151130676},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5427437424659729},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.5033928751945496},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4879305064678192},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.48530977964401245},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45087170600891113},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4206065535545349},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3684525489807129},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2144215703010559},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12320882081985474}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6890345215797424},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5827099680900574},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5647389888763428},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5445178151130676},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5427437424659729},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.5033928751945496},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4879305064678192},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.48530977964401245},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45087170600891113},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4206065535545349},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3684525489807129},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2144215703010559},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12320882081985474},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gki117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki117","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D533/7622345/gki117.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608255","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:163558","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC540071","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:540071","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540071","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki117","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D533/7622345/gki117.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4300000071525574}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2036557617.pdf","grobid_xml":"https://content.openalex.org/works/W2036557617.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1597538863","https://openalex.org/W1957753077","https://openalex.org/W2019330983","https://openalex.org/W2050664991","https://openalex.org/W2059207532","https://openalex.org/W2088844778","https://openalex.org/W2109363337","https://openalex.org/W2109460375","https://openalex.org/W2110598359","https://openalex.org/W2147246240","https://openalex.org/W2148853951","https://openalex.org/W2150926065","https://openalex.org/W4246066782"],"related_works":["https://openalex.org/W2052655934","https://openalex.org/W1922686488","https://openalex.org/W104645380","https://openalex.org/W2127546476","https://openalex.org/W2027213253","https://openalex.org/W2017047508","https://openalex.org/W2165201120","https://openalex.org/W2023641020","https://openalex.org/W2188530857","https://openalex.org/W2133040682"],"abstract_inverted_index":{"Gene":[0,107],"expression":[1,47,69,73,148],"profiling":[2],"of":[3,13,20,23,116,125,133,144,171],"cancer":[4,14,67],"tissues":[5],"is":[6,173],"expected":[7],"to":[8,10,141],"contribute":[9],"our":[11],"understanding":[12],"biology":[15],"as":[16,18,40,157],"well":[17],"developments":[19],"new":[21],"methods":[22],"diagnosis":[24],"and":[25,43,56,74,149,159],"therapy.":[26],"Our":[27],"collaborative":[28],"efforts":[29],"in":[30,79,86,165],"Japan":[31],"have":[32],"been":[33],"mainly":[34,60],"focused":[35],"on":[36],"solid":[37],"tumors":[38],"such":[39,156],"breast,":[41],"colorectal":[42],"hepatocellular":[44],"cancers.":[45],"The":[46,92,169],"data":[48,76,93,135],"are":[49,58,77],"obtained":[50],"by":[51,98,102,106,120],"a":[52,62,80],"high-throughput":[53],"RT-PCR":[54],"technique,":[55],"patients":[57],"recruited":[59],"from":[61],"single":[63],"hospital.":[64],"In":[65],"the":[66,72,111,126,134,166],"gene":[68,99,147],"database":[70],"(CGED),":[71],"clinical":[75,150],"presented":[78],"way":[81],"useful":[82],"for":[83,153],"scientists":[84],"interested":[85],"specific":[87],"genes":[88],"or":[89,101,110,122],"biological":[90],"functions.":[91],"can":[94,128],"be":[95,129,163],"retrieved":[96],"either":[97],"identifiers":[100],"functional":[103],"categories":[104],"defined":[105],"Ontology":[108],"terms":[109],"Swiss-Prot":[112],"annotation.":[113],"Expression":[114],"patterns":[115],"multiple":[117],"genes,":[118],"selected":[119],"names":[121],"similarity":[123],"search":[124],"patterns,":[127],"compared.":[130],"Visual":[131],"presentation":[132],"with":[136],"sorting":[137],"function":[138],"enables":[139],"users":[140],"easily":[142],"recognize":[143],"relationships":[145],"between":[146],"parameters.":[151],"Data":[152],"other":[154],"cancers":[155,161],"lung":[158],"thyroid":[160],"will":[162],"added":[164],"near":[167],"future.":[168],"URL":[170],"CGED":[172],"http://cged.hgc.jp.":[174]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
