{"id":"https://openalex.org/W2106587213","doi":"https://doi.org/10.1093/nar/gki116","title":"SilkDB: a knowledgebase for silkworm biology and genomics","display_name":"SilkDB: a knowledgebase for silkworm biology and genomics","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2106587213","doi":"https://doi.org/10.1093/nar/gki116","mag":"2106587213","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608225"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki116","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/gki116","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540070","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045289658","display_name":"Jing Wang","orcid":"https://orcid.org/0000-0001-6080-7998"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"J. Wang","raw_affiliation_strings":["College of Life Sciences, Peking University, Beijing 100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing 100871, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045289658"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":6.0813,"has_fulltext":false,"cited_by_count":168,"citation_normalized_percentile":{"value":0.96574481,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"33","issue":"Database issue","first_page":"D399","last_page":"D402"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11966","display_name":"Silk-based biomaterials and applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11966","display_name":"Silk-based biomaterials and applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14048","display_name":"Silkworms and Sericulture Research","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9509668946266174},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6537532210350037},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5318992137908936},{"id":"https://openalex.org/keywords/genome-biology","display_name":"Genome Biology","score":0.41607239842414856},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41365689039230347},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4021873474121094},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3221760392189026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17746105790138245}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9509668946266174},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6537532210350037},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5318992137908936},{"id":"https://openalex.org/C64015301","wikidata":"https://www.wikidata.org/wiki/Q5533480","display_name":"Genome Biology","level":5,"score":0.41607239842414856},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41365689039230347},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4021873474121094},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3221760392189026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17746105790138245},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007915","descriptor_name":"Lepidoptera","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007915","descriptor_name":"Lepidoptera","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007915","descriptor_name":"Lepidoptera","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007915","descriptor_name":"Lepidoptera","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gki116","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/gki116","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608225","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608225","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:sdu.dk:openaire_cris_publications/d79a87e0-e070-11dc-a57f-000ea68e967b","is_oa":false,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/d79a87e0-e070-11dc-a57f-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306400424","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wang, J, Xia, Q, He, X, Dai, M, Ruan, J, Chen, J, Yu, G, Yuan, H, Hu, Y, Li, R, Feng, T, Ye, C, Lu, C, Wang, J, Li, S, Wong, G K-S, Yang, H, Wang, J, Xiang, Z, Zhou, Z & Yu, J 2005, 'SilkDB: a knowledgebase for silkworm biology and genomics.', Nucleic Acids Research, vol. 33, no. Database issue, pp. D399-402. https://doi.org/10.1093/nar/gki116","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:163557","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC540070","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:540070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540070","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:540070","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540070","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320326446","display_name":"National Development and Reform Commission","ror":"https://ror.org/017a59b72"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1527927437","https://openalex.org/W1985471440","https://openalex.org/W2032914088","https://openalex.org/W2051094217","https://openalex.org/W2080793595","https://openalex.org/W2108401170","https://openalex.org/W2117936709","https://openalex.org/W2119248143","https://openalex.org/W2125515637","https://openalex.org/W2134988768","https://openalex.org/W2139938753","https://openalex.org/W2141652419","https://openalex.org/W2144490750","https://openalex.org/W2148072340","https://openalex.org/W2152399502","https://openalex.org/W2156622081","https://openalex.org/W2166187656","https://openalex.org/W2981209166","https://openalex.org/W3021319076","https://openalex.org/W3161788579","https://openalex.org/W4230501579","https://openalex.org/W4241391257","https://openalex.org/W4249454863"],"related_works":["https://openalex.org/W2053972265","https://openalex.org/W2385787406","https://openalex.org/W2099543256","https://openalex.org/W2266194722","https://openalex.org/W185100777","https://openalex.org/W2365466262","https://openalex.org/W2530330912","https://openalex.org/W2129068887","https://openalex.org/W2089017160","https://openalex.org/W2410725844"],"abstract_inverted_index":{"The":[0],"Silkworm":[1],"Knowledgebase":[2],"(SilkDB)":[3],"is":[4,173],"a":[5,25,81,88,94,134,139,146],"web-based":[6],"repository":[7],"for":[8,165],"the":[9,21,32,43,105,119,150,154,166],"curation,":[10],"integration":[11],"and":[12,17,63,73,93,107,112,115,118,124,152,157,162],"study":[13],"of":[14,24,31,42,50,66,83,91,96,168],"silkworm":[15,34,151,155],"genetic":[16],"genomic":[18],"data.":[19],"With":[20],"recent":[22],"accomplishment":[23],"approximately":[26],"6X":[27],"draft":[28],"genome":[29,131,156],"sequence":[30,46,52,132],"domestic":[33,106],"(Bombyx":[35],"mori),":[36],"SilkDB":[37,78,142,172],"provides":[38],"an":[39],"integrated":[40],"representation":[41],"large-scale,":[44],"genome-wide":[45],"assembly,":[47],"cDNAs,":[48],"clusters":[49],"expressed":[51],"tags":[53],"(ESTs),":[54],"transposable":[55],"elements":[56],"(TEs),":[57],"mutants,":[58],"single":[59],"nucleotide":[60],"polymorphisms":[61],"(SNPs)":[62],"functional":[64],"annotations":[65],"genes":[67,97],"with":[68],"assignments":[69],"to":[70,144],"InterPro":[71],"domains":[72],"Gene":[74],"Ontology":[75],"(GO)":[76],"terms.":[77],"also":[79],"hosts":[80],"set":[82],"ESTs":[84],"from":[85,98],"Bombyx":[86],"mandarina,":[87],"wild":[89,108],"progenitor":[90],"B.mori,":[92],"collection":[95],"other":[99,113],"Lepidoptera.":[100],"Comparative":[101],"analysis":[102],"results":[103],"between":[104,110,116],"silkworm,":[109],"B.mori":[111,117,130],"Lepidoptera,":[114],"two":[120],"sequenced":[121],"insects,":[122],"fruitfly":[123],"mosquito,":[125],"are":[126],"displayed":[127],"by":[128],"using":[129],"as":[133,138],"reference":[135],"framework.":[136],"Designed":[137],"basic":[140],"platform,":[141],"strives":[143],"provide":[145],"comprehensive":[147],"knowledgebase":[148],"about":[149],"present":[153],"related":[158],"information":[159],"in":[160],"systematic":[161],"graphical":[163],"ways":[164],"convenience":[167],"in-depth":[169],"comparative":[170],"studies.":[171],"publicly":[174],"accessible":[175],"at":[176],"http://silkworm.genomics.org.cn.":[177]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":9}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
