{"id":"https://openalex.org/W2115829389","doi":"https://doi.org/10.1093/nar/gki100","title":"The UCSC Proteome Browser","display_name":"The UCSC Proteome Browser","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2115829389","doi":"https://doi.org/10.1093/nar/gki100","mag":"2115829389","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608236"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki100","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki100","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D454/7622242/gki100.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D454/7622242/gki100.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109362099","display_name":"F. Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"F. Hsu","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. fanhsu@soe.ucsc.edu","Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. fanhsu@soe.ucsc.edu","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5109362099"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.7734,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.90474174,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"33","issue":"Database issue","first_page":"D454","last_page":"D458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.8434616923332214},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.8411353826522827},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7621617317199707},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6507289409637451},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48841923475265503},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.4487329423427582},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.4124365448951721},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40035825967788696},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.37371936440467834},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35436588525772095},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3391011953353882}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.8434616923332214},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.8411353826522827},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7621617317199707},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6507289409637451},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48841923475265503},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.4487329423427582},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.4124365448951721},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40035825967788696},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.37371936440467834},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35436588525772095},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3391011953353882}],"mesh":[{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gki100","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki100","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D454/7622242/gki100.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.857.982","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.857.982","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/33/suppl_1/D454.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:163545","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC540054","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:540054","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540054","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki100","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki100","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D454/7622242/gki100.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G845722000","display_name":null,"funder_award_id":"(HHMI)","funder_id":"https://openalex.org/F4320306082","funder_display_name":"Howard Hughes Medical Institute"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115829389.pdf","grobid_xml":"https://content.openalex.org/works/W2115829389.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W54756646","https://openalex.org/W1536886974","https://openalex.org/W1975304761","https://openalex.org/W2099946731","https://openalex.org/W2108871359","https://openalex.org/W2128016314","https://openalex.org/W2130479394","https://openalex.org/W2131736388","https://openalex.org/W2136145671","https://openalex.org/W2148853951","https://openalex.org/W2153582608","https://openalex.org/W2158714788","https://openalex.org/W2168783124","https://openalex.org/W2168909179","https://openalex.org/W4240921265","https://openalex.org/W4244736178","https://openalex.org/W4292158482","https://openalex.org/W4293196852","https://openalex.org/W4295888250"],"related_works":["https://openalex.org/W2139297998","https://openalex.org/W3109437984","https://openalex.org/W2462807523","https://openalex.org/W2274932919","https://openalex.org/W2804921183","https://openalex.org/W4387264054","https://openalex.org/W3092794487","https://openalex.org/W2094752534","https://openalex.org/W2885268310","https://openalex.org/W2152320398"],"abstract_inverted_index":{"The":[0,27,56,115,176],"University":[1],"of":[2,12,61,71,90,99,111,162,187],"California":[3],"Santa":[4],"Cruz":[5],"(UCSC)":[6],"Proteome":[7,28,57,116,166],"Browser":[8,29,43,58,117,167,190],"provides":[9,119],"a":[10],"wealth":[11],"protein":[13,62,91],"information":[14,138],"presented":[15],"in":[16,124],"graphical":[17],"images":[18],"and":[19,49,63,73,78,103,133,142,151,153,159,173],"with":[20,33,107],"links":[21,120],"to":[22,121],"other":[23],"protein-related":[24],"Internet":[25],"sites.":[26],"is":[30,168,196],"tightly":[31],"integrated":[32],"the":[34,39,47,112,125,128,134,147,165,188],"UCSC":[35],"Genome":[36,42,126,189],"Browser.":[37],"For":[38],"first":[40],"time,":[41],"users":[44],"have":[45],"both":[46],"genome":[48],"proteome":[50],"worlds":[51],"at":[52,146,156,191],"their":[53],"fingertips":[54],"simultaneously.":[55],"displays":[59],"tracks":[60],"genomic":[64],"sequences,":[65],"exon":[66],"structure,":[67],"polarity,":[68],"hydrophobicity,":[69],"locations":[70],"cysteine":[72,104],"glycosylation":[74],"potential,":[75],"Superfamily":[76],"domains":[77,102],"amino":[79],"acids":[80],"that":[81],"deviate":[82],"from":[83,139,181],"normal":[84],"abundance.":[85],"Histograms":[86],"show":[87],"genome-wide":[88],"distribution":[89],"properties,":[92],"including":[93],"isoelectric":[94],"point,":[95],"molecular":[96],"weight,":[97],"number":[98],"exons,":[100],"InterPro":[101,141],"locations,":[105],"together":[106],"specific":[108],"property":[109],"values":[110],"selected":[113],"protein.":[114],"also":[118,197],"gene":[122],"annotations":[123],"Browser,":[127],"Known":[129,183],"Genes":[130,184],"details":[131,185],"page":[132,186],"Gene":[135],"Sorter;":[136],"domain":[137],"Superfamily,":[140],"Pfam;":[143],"three-dimensional":[144],"structures":[145],"Protein":[148],"Data":[149],"Bank":[150],"ModBase;":[152],"pathway":[154],"data":[155],"KEGG,":[157],"BioCarta/CGAP":[158],"BioCyc.":[160],"As":[161],"August":[163],"2004,":[164],"available":[169,198],"for":[170],"human,":[171],"mouse":[172],"rat":[174],"proteomes.":[175],"browser":[177],"may":[178],"be":[179],"accessed":[180],"any":[182],"http://genome.ucsc.edu.":[192],"A":[193],"user's":[194],"guide":[195],"on":[199],"this":[200],"website.":[201]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
