{"id":"https://openalex.org/W2109460622","doi":"https://doi.org/10.1093/nar/gki076","title":"Polymorphix: a sequence polymorphism database","display_name":"Polymorphix: a sequence polymorphism database","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2109460622","doi":"https://doi.org/10.1093/nar/gki076","mag":"2109460622","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608242"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki076","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/gki076","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540030","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070719573","display_name":"\u00c9ric Bazin","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154202486","display_name":"Ifremer","ror":"https://ror.org/044jxhp58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154202486"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"E. Bazin","raw_affiliation_strings":["Laboratoire G\u00e9nome Populations Interactions Adaptation, Unit\u00e9 Mixte de Recherche No. 5171 (UMR UM2-IFREMER-CNRS), Universit\u00e9 de Montpellier 2, 34095 Montpellier Cedex 5, France. bazin@univ-montp2.fr"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire G\u00e9nome Populations Interactions Adaptation, Unit\u00e9 Mixte de Recherche No. 5171 (UMR UM2-IFREMER-CNRS), Universit\u00e9 de Montpellier 2, 34095 Montpellier Cedex 5, France. bazin@univ-montp2.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154202486","https://openalex.org/I19894307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070719573"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154202486","https://openalex.org/I19894307"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.0185,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.73594432,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"33","issue":"Database issue","first_page":"D481","last_page":"D484"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8711684942245483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8258460760116577},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.6163979172706604},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5394729971885681},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4981863498687744},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47498244047164917},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.4556494355201721},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4428028464317322},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4427635669708252},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3967600464820862},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3526122570037842},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13777947425842285},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10933595895767212},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10749697685241699}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8711684942245483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8258460760116577},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.6163979172706604},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5394729971885681},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4981863498687744},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47498244047164917},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.4556494355201721},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4428028464317322},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4427635669708252},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3967600464820862},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3526122570037842},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13777947425842285},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10933595895767212},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10749697685241699},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gki076","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/gki076","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608242","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608242","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:163526","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC540030","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:540030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540030","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:540030","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540030","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},"sustainable_development_goals":[{"score":0.6499999761581421,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1914169001","https://openalex.org/W1966786019","https://openalex.org/W1982603712","https://openalex.org/W1988714210","https://openalex.org/W2001803742","https://openalex.org/W2042687932","https://openalex.org/W2051066874","https://openalex.org/W2054968962","https://openalex.org/W2078582987","https://openalex.org/W2082121791","https://openalex.org/W2097706568","https://openalex.org/W2105537006","https://openalex.org/W2114355733","https://openalex.org/W2114918896","https://openalex.org/W2115325942","https://openalex.org/W2133609795","https://openalex.org/W2149160071","https://openalex.org/W2149208773","https://openalex.org/W2155967582","https://openalex.org/W2159003965","https://openalex.org/W2159620702","https://openalex.org/W2163600007","https://openalex.org/W2169509509","https://openalex.org/W2170129656","https://openalex.org/W2170657995","https://openalex.org/W2171377018"],"related_works":["https://openalex.org/W2926533301","https://openalex.org/W2018564950","https://openalex.org/W2036521446","https://openalex.org/W2105364679","https://openalex.org/W2149758239","https://openalex.org/W2035120013","https://openalex.org/W408054492","https://openalex.org/W1484074690","https://openalex.org/W2095439426","https://openalex.org/W1938894828"],"abstract_inverted_index":{"Within-species":[0],"sequence":[1,53,59],"variation":[2],"data":[3],"are":[4,30,37,100],"of":[5,115],"special":[6],"interest":[7],"since":[8],"they":[9],"contain":[10],"information":[11],"about":[12],"recent":[13],"population/species":[14],"history,":[15],"and":[16,36,67,79,112],"the":[17,103,109],"molecular":[18],"evolutionary":[19],"forces":[20],"currently":[21],"in":[22,24,102,120],"action":[23],"natural":[25],"populations.":[26],"These":[27],"data,":[28],"however,":[29],"presently":[31],"dispersed":[32],"within":[33,87],"generalist":[34],"databases,":[35],"difficult":[38],"to":[39,52],"access.":[40],"To":[41],"solve":[42],"this":[43],"problem,":[44],"we":[45],"have":[46],"developed":[47],"Polymorphix,":[48],"a":[49,127],"database":[50,75],"dedicated":[51],"polymorphism.":[54],"It":[55,122],"contains":[56,106],"within-species":[57],"homologous":[58],"families":[60,88],"built":[61],"using":[62],"EMBL/GenBank":[63],"under":[64],"suitable":[65],"similarity":[66],"bibliographic":[68],"criteria.":[69],"Polymorphix":[70,105],"is":[71],"an":[72],"ACNUC":[73],"structured":[74],"allowing":[76],"both":[77],"simple":[78],"complex":[80],"queries":[81],"for":[82],"population":[83],"genomic":[84],"studies.":[85],"Alignments":[86],"as":[89,91],"well":[90],"phylogenetic":[92],"trees":[93],"can":[94,123],"be":[95,124],"download.":[96],"When":[97],"available,":[98],"outgroups":[99],"included":[101],"alignment.":[104],"sequences":[107],"from":[108],"nuclear,":[110],"mitochondrial":[111],"chloroplastic":[113],"genomes":[114],"every":[116],"eukaryote":[117],"species":[118],"represented":[119],"EMBL.":[121],"accessed":[125],"by":[126],"web":[128],"interface":[129],"(http://pbil.univ-lyon1.fr/polymorphix/query.php).":[130]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
