{"id":"https://openalex.org/W4246188361","doi":"https://doi.org/10.1093/nar/gki029","title":"REBASE--restriction enzymes and DNA methyltransferases","display_name":"REBASE--restriction enzymes and DNA methyltransferases","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W4246188361","doi":"https://doi.org/10.1093/nar/gki029"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki029","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D230/7621620/gki029.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D230/7621620/gki029.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091034547","display_name":"Richard J. Roberts","orcid":"https://orcid.org/0000-0002-4348-0169"},"institutions":[{"id":"https://openalex.org/I115020962","display_name":"New England Biolabs (United States)","ror":"https://ror.org/04ywg3445","country_code":"US","type":"company","lineage":["https://openalex.org/I115020962"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. J. Roberts","raw_affiliation_strings":["New England Biolabs, Inc., 32 Tozer Road, Beverly, MA 01915 USA. roberts@neb.com","New England Biolabs, Inc., 32 Tozer Road, Beverly, MA 01915 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New England Biolabs, Inc., 32 Tozer Road, Beverly, MA 01915 USA. roberts@neb.com","institution_ids":["https://openalex.org/I115020962"]},{"raw_affiliation_string":"New England Biolabs, Inc., 32 Tozer Road, Beverly, MA 01915 USA","institution_ids":["https://openalex.org/I115020962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5091034547"],"corresponding_institution_ids":["https://openalex.org/I115020962"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":8.6819,"has_fulltext":true,"cited_by_count":127,"citation_normalized_percentile":{"value":0.98652908,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"33","issue":"Database issue","first_page":"D230","last_page":"D232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9322999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9322999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9568949341773987},{"id":"https://openalex.org/keywords/methyltransferase","display_name":"Methyltransferase","score":0.8161051273345947},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.595879077911377},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.5844525098800659},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5784900188446045},{"id":"https://openalex.org/keywords/restriction-enzyme","display_name":"Restriction enzyme","score":0.5440489649772644},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3325199484825134},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.32108527421951294},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.1561790108680725}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9568949341773987},{"id":"https://openalex.org/C91965660","wikidata":"https://www.wikidata.org/wiki/Q415875","display_name":"Methyltransferase","level":4,"score":0.8161051273345947},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.595879077911377},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.5844525098800659},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5784900188446045},{"id":"https://openalex.org/C128319531","wikidata":"https://www.wikidata.org/wiki/Q219715","display_name":"Restriction enzyme","level":3,"score":0.5440489649772644},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3325199484825134},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.32108527421951294},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.1561790108680725}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/nar/gki029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki029","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D230/7621620/gki029.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:539983","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/539983","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki029","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki029","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D230/7621620/gki029.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.49000000953674316,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G1290917364","display_name":null,"funder_award_id":"P41 LM005800","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4940780184","display_name":null,"funder_award_id":"LM04971","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4246188361.pdf","grobid_xml":"https://content.openalex.org/works/W4246188361.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1990139422","https://openalex.org/W2099235960","https://openalex.org/W2103148772","https://openalex.org/W2113677672","https://openalex.org/W2118473805","https://openalex.org/W2148853951","https://openalex.org/W3095583226","https://openalex.org/W4249231467"],"related_works":["https://openalex.org/W4316690323","https://openalex.org/W2089104969","https://openalex.org/W3147900171","https://openalex.org/W2000439691","https://openalex.org/W3172822044","https://openalex.org/W2295289688","https://openalex.org/W3080212124","https://openalex.org/W1555483127","https://openalex.org/W2783893042","https://openalex.org/W134745220"],"abstract_inverted_index":{"REBASE":[0,47,87],"is":[1,63],"a":[2],"comprehensive":[3],"database":[4],"of":[5,57,65,86],"information":[6,26,52],"about":[7,27,53],"restriction":[8,58],"enzymes,":[9],"DNA":[10],"methyltransferases":[11],"and":[12,22,29,36,50,79,97,104],"related":[13],"proteins":[14],"involved":[15],"in":[16,75],"restriction-modification.":[17],"It":[18],"contains":[19,48],"both":[20],"published":[21],"unpublished":[23],"work":[24],"with":[25],"recognition":[28],"cleavage":[30],"sites,":[31],"isoschizomers,":[32],"commercial":[33],"availability,":[34],"crystal":[35],"sequence":[37],"data.":[38],"Experimentally":[39],"characterized":[40],"homing":[41],"endonucleases":[42],"are":[43,70,88],"also":[44],"included.":[45],"Additionally,":[46],"complete":[49],"up-to-date":[51],"the":[54,66,76,93],"methylation":[55],"sensitivity":[56],"endonucleases.":[59],"An":[60],"extensive":[61],"analysis":[62],"included":[64],"restriction-modification":[67],"systems":[68],"that":[69,108],"predicted":[71],"to":[72],"be":[73,110],"present":[74],"sequenced":[77],"bacterial":[78],"archaeal":[80],"genomes":[81],"from":[82,92],"GenBank.":[83],"The":[84],"contents":[85],"available":[89],"by":[90,101],"browsing":[91],"web":[94],"(http://rebase.neb.":[95],"com/rebase/rebase.html)":[96],"through":[98],"selected":[99],"compilations":[100],"ftp":[102],"(ftp.neb.com)":[103],"as":[105],"monthly":[106],"updates":[107],"can":[109],"requested":[111],"via":[112],"email.":[113]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
