{"id":"https://openalex.org/W2166456241","doi":"https://doi.org/10.1093/nar/gki009","title":"The Ashbya Genome Database (AGD)--a tool for the yeast community and genome biologists","display_name":"The Ashbya Genome Database (AGD)--a tool for the yeast community and genome biologists","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2166456241","doi":"https://doi.org/10.1093/nar/gki009","mag":"2166456241","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608214"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki009","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D348/7621442/gki009.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D348/7621442/gki009.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045634433","display_name":"Leandro C. Hermida","orcid":"https://orcid.org/0000-0003-3887-518X"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"L. Hermida","raw_affiliation_strings":["Department of Applied Microbiology, Biozentrum, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Applied Microbiology, Biozentrum, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045634433"],"corresponding_institution_ids":["https://openalex.org/I1850255"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":0.9647,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.73627976,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"33","issue":"Database issue","first_page":"D348","last_page":"D352"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10750","display_name":"Fermentation and Sensory Analysis","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8470766544342041},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7575889825820923},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.7515310049057007},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6032360792160034},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.5342774391174316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4291870594024658},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37106719613075256},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37006598711013794}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8470766544342041},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7575889825820923},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.7515310049057007},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6032360792160034},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.5342774391174316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4291870594024658},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37106719613075256},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37006598711013794},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004718","descriptor_name":"Saccharomycetales","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004718","descriptor_name":"Saccharomycetales","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004718","descriptor_name":"Saccharomycetales","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gki009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki009","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D348/7621442/gki009.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608214","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608214","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:doc.rero.ch:304333","is_oa":true,"landing_page_url":null,"pdf_url":"http://doc.rero.ch/record/304333/files/gki009.pdf","source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:163474","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC539963","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:539963","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/539963","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki009","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D348/7621442/gki009.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166456241.pdf","grobid_xml":"https://content.openalex.org/works/W2166456241.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1892624528","https://openalex.org/W1977950863","https://openalex.org/W2012575511","https://openalex.org/W2041887960","https://openalex.org/W2054624670","https://openalex.org/W2058682865","https://openalex.org/W2069516109","https://openalex.org/W2081933515","https://openalex.org/W2103406786","https://openalex.org/W2106479406","https://openalex.org/W2114343476","https://openalex.org/W2116402707","https://openalex.org/W2116905253","https://openalex.org/W2118930999","https://openalex.org/W2122232025","https://openalex.org/W2122261141","https://openalex.org/W2124354935","https://openalex.org/W2137441463","https://openalex.org/W2141144953","https://openalex.org/W2142237411","https://openalex.org/W2148853951","https://openalex.org/W2148925442","https://openalex.org/W2153283265","https://openalex.org/W2166785962"],"related_works":["https://openalex.org/W1969010119","https://openalex.org/W2571897395","https://openalex.org/W2131180151","https://openalex.org/W2037172645","https://openalex.org/W4243565069","https://openalex.org/W2106726141","https://openalex.org/W1995489406","https://openalex.org/W2119233950","https://openalex.org/W1974162471","https://openalex.org/W2094548157"],"abstract_inverted_index":{"The":[0,20,133],"Ashbya":[1,18],"Genome":[2],"Database":[3],"(AGD)":[4],"is":[5,23,103,173],"a":[6,104,138],"comprehensive":[7],"online":[8],"source":[9],"of":[10,53,84,90,98,126],"information":[11],"covering":[12],"genes":[13,86],"from":[14,73],"the":[15,32,85,88,110],"filamentous":[16],"fungus":[17],"gossypii.":[19],"database":[21,134],"content":[22],"based":[24],"upon":[25],"comparative":[26,130],"genome":[27,89,127,131,149],"annotation":[28],"between":[29],"A.gossypii":[30,74,91],"and":[31,43,47,79,94,129,148,154,157,170],"closely":[33],"related":[34],"budding":[35,78,99],"yeast":[36,112],"Saccharomyces":[37],"cerevisiae":[38],"taking":[39],"both":[40],"sequence":[41],"similarity":[42],"synteny":[44],"(conserved":[45],"order":[46],"orientation)":[48],"into":[49],"account.":[50],"Release":[51],"2":[52],"AGD":[54,102,172],"contains":[55],"4718":[56],"protein-encoding":[57],"loci":[58,97],"located":[59],"across":[60],"seven":[61],"chromosomes.":[62],"Information":[63],"can":[64],"be":[65],"retrieved":[66],"using":[67],"systematic":[68],"or":[69],"standard":[70],"locus":[71,146],"names":[72],"as":[75,77],"well":[76],"fission":[80],"yeast.":[81,100],"Approximately":[82],"90%":[83],"in":[87,114,123],"are":[92,121],"homologous":[93],"syntenic":[95],"to":[96,161],"Therefore,":[101],"useful":[105],"tool":[106],"not":[107],"only":[108],"for":[109,118],"various":[111,145],"communities":[113],"general":[115],"but":[116],"also":[117],"biologists":[119],"who":[120],"interested":[122],"evolutionary":[124],"aspects":[125],"research":[128],"annotation.":[132],"provides":[135],"scientists":[136],"with":[137],"convenient":[139],"graphical":[140],"user":[141],"interface":[142],"that":[143],"includes":[144],"search":[147],"browsing":[150],"options,":[151],"data":[152],"download":[153],"export":[155],"functionalities":[156],"numerous":[158],"reciprocal":[159],"links":[160],"external":[162],"databases":[163],"including":[164],"SGD,":[165],"MIPS,":[166],"GeneDB,":[167],"KEGG,":[168],"GermOnline":[169],"Swiss-Prot/TrEMBL.":[171],"accessible":[174],"at":[175],"http://agd.unibas.ch/.":[176]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
