{"id":"https://openalex.org/W2157007944","doi":"https://doi.org/10.1093/nar/gkh480","title":"JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure","display_name":"JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure","publication_year":2004,"publication_date":"2004-07-01","ids":{"openalex":"https://openalex.org/W2157007944","doi":"https://doi.org/10.1093/nar/gkh480","mag":"2157007944","pmid":"https://pubmed.ncbi.nlm.nih.gov/15215458"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh480","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W595/6212053/gkh480.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W595/6212053/gkh480.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076918011","display_name":"Goran Neshich","orcid":"https://orcid.org/0000-0003-4982-0416"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]},{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"G. Neshich","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica Estrutural, Embrapa/Inform\u00e1tica Agropecu\u00e1ria, Campinas, Brazil. neshich@cnptia.embrapa.br","NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica Estrutural, Embrapa/Inform\u00e1tica Agropecu\u00e1ria, Campinas, Brazil. neshich@cnptia.embrapa.br","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089704088","display_name":"Walter Rocchia","orcid":"https://orcid.org/0000-0003-2480-7151"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W. Rocchia","raw_affiliation_strings":["NEST CNR-INFM and Dipartimento di Fisica (Italy)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NEST CNR-INFM and Dipartimento di Fisica (Italy)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038294401","display_name":"A. L. Mancini","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. L. Mancini","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066373426","display_name":"M. E. B. Yamagishi","orcid":"https://orcid.org/0000-0001-7109-3038"},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M. E. B. Yamagishi","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058040518","display_name":"Paula R. Kuser","orcid":"https://orcid.org/0000-0002-0034-0932"},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"P. R. Kuser","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038836317","display_name":"R. Fileto","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. Fileto","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047766466","display_name":"Christian Baudet","orcid":"https://orcid.org/0000-0002-9187-6512"},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"C. Baudet","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046863606","display_name":"I. P. Pinto","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"I. P. Pinto","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063478567","display_name":"A. J. Montagner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. J. Montagner","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064372896","display_name":"J. F. Palandrani","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"J. F. Palandrani","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084772510","display_name":"J. N. Krauchenco","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"J. N. Krauchenco","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108531415","display_name":"R. C. Torres","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. C. Torres","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020158687","display_name":"Simone R. S. Souza","orcid":"https://orcid.org/0000-0001-9007-9821"},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"S. Souza","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087789032","display_name":"Roberto Coiti Togawa","orcid":"https://orcid.org/0000-0001-7179-3210"},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. C. Togawa","raw_affiliation_strings":["Laborat\u00f3rio de Bioinform\u00e1tica (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Bioinform\u00e1tica (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113923068","display_name":"R. H. Higa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103337","display_name":"Centro de Excel\u00eancia em Bioinform\u00e1tica","ror":"https://ror.org/01dyrk434","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210103337"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. H. Higa","raw_affiliation_strings":["NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBI - N\u00facleo de Bioinform\u00e1tica Estrutural (Brazil)","institution_ids":["https://openalex.org/I4210103337"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5076918011"],"corresponding_institution_ids":["https://openalex.org/I199691007","https://openalex.org/I4210103337"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6883,"has_fulltext":false,"cited_by_count":70,"citation_normalized_percentile":{"value":0.83231387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"Web Server","first_page":"W595","last_page":"W601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.745036780834198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5778352618217468},{"id":"https://openalex.org/keywords/interactivity","display_name":"Interactivity","score":0.4947969317436218},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.44523319602012634},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.43918025493621826},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3857969343662262},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3696299195289612},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3578762412071228},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2786208391189575}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.745036780834198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5778352618217468},{"id":"https://openalex.org/C144430266","wikidata":"https://www.wikidata.org/wiki/Q839721","display_name":"Interactivity","level":2,"score":0.4947969317436218},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.44523319602012634},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.43918025493621826},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3857969343662262},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3696299195289612},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3578762412071228},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2786208391189575},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043484","descriptor_name":"Proprotein Convertases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043484","descriptor_name":"Proprotein Convertases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043484","descriptor_name":"Proprotein Convertases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043484","descriptor_name":"Proprotein Convertases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkh480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh480","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W595/6212053/gkh480.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15215458","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15215458","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:repositorio.unicamp.br:REPOSIP/52440","is_oa":false,"landing_page_url":"http://www.repositorio.unicamp.br/jspui/handle/REPOSIP/52440","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Web of Science","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:hal-01092990v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01092990","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2004, Web Server issue, 32, pp.W595-W601. &#x27E8;10.1093/nar/gkh480&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:americanae.aecid.es:2830303","is_oa":false,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=2830303","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Web of Science","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:162851","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC441618","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:441618","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/441618","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh480","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh480","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W595/6212053/gkh480.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322904","display_name":"Financiadora de Estudos e Projetos","ror":"https://ror.org/030w99567"},{"id":"https://openalex.org/F4320323314","display_name":"Fukuoka University","ror":"https://ror.org/04nt8b154"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2157007944.pdf"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W64749174","https://openalex.org/W1533208683","https://openalex.org/W1969370001","https://openalex.org/W2008708467","https://openalex.org/W2048714785","https://openalex.org/W2054668663","https://openalex.org/W2059284454","https://openalex.org/W2065232574","https://openalex.org/W2099254366","https://openalex.org/W2106315897","https://openalex.org/W2115592403","https://openalex.org/W2130479394","https://openalex.org/W2141920771","https://openalex.org/W2152326664","https://openalex.org/W2152705200","https://openalex.org/W2163352757","https://openalex.org/W2166233246","https://openalex.org/W2171742422","https://openalex.org/W2327525319"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2189613078","https://openalex.org/W2586219255","https://openalex.org/W2547096368"],"abstract_inverted_index":{"JavaProtein":[0],"Dossier":[1],"((J)PD)":[2],"is":[3,160],"a":[4,39,45],"new":[5,68],"concept,":[6],"database":[7],"and":[8,26,52,89,134,172],"visualization":[9,129],"tool":[10],"providing":[11],"one":[12],"of":[13,17,48,95,98,127,150,157],"the":[14,18,49,64,71,92,121,132,148,164],"largest":[15],"collections":[16],"physicochemical":[19,93,122],"parameters":[20,62,94],"describing":[21],"proteins'":[22],"structure,":[23],"stability,":[24],"function":[25],"interaction":[27],"with":[28,63,153],"other":[29],"macromolecules.":[30],"By":[31],"collecting":[32],"as":[33,36],"many":[34],"descriptors/parameters":[35],"possible":[37],"within":[38],"single":[40],"database,":[41],"we":[42],"can":[43,78,86],"achieve":[44],"better":[46],"use":[47,149],"available":[50],"data":[51,55],"information.":[53],"Furthermore,":[54],"grouping":[56],"allows":[57],"us":[58],"to":[59,66,82,118,139,144],"generate":[60],"different":[61],"potential":[65],"provide":[67],"insights":[69],"into":[70],"sequence-structure-function":[72],"relationship.":[73],"In":[74,116],"(J)PD,":[75],"residue":[76],"selection":[77],"be":[79,140],"performed":[80],"according":[81],"multiple":[83],"criteria.":[84],"(J)PD":[85,159],"simultaneously":[87],"display":[88],"analyze":[90],"all":[91],"any":[96],"pair":[97],"structures,":[99],"using":[100],"precalculated":[101],"structural":[102,135],"alignments,":[103],"allowing":[104],"direct":[105],"parameter":[106],"comparison":[107],"at":[108,168],"corresponding":[109],"amino":[110],"acid":[111],"positions":[112],"among":[113],"homologous":[114],"structures.":[115],"order":[117],"focus":[119],"on":[120],"(and":[123],"consequently":[124],"pharmacological)":[125],"profile":[126],"proteins,":[128],"tools":[130],"(showing":[131],"structure":[133],"parameters)":[136],"also":[137],"had":[138],"optimized.":[141],"Our":[142],"response":[143],"this":[145],"challenge":[146],"was":[147],"Java":[151],"technology":[152],"its":[154],"exceptional":[155],"level":[156],"interactivity.":[158],"freely":[161],"accessible":[162],"(within":[163],"Gold":[165],"Sting":[166],"Suite)":[167],"http://sms.cbi.cnptia.embrapa.br,":[169],"http://mirrors.rcsb.org/SMS,":[170],"http://trantor.bioc.columbia.edu/SMS":[171],"http://www.es.embnet.org/SMS/":[173],"(Option:":[174],"(Java)Protein":[175],"Dossier).":[176]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":34},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
