{"id":"https://openalex.org/W2086383321","doi":"https://doi.org/10.1093/nar/gkh453","title":"PubCrawler: keeping up comfortably with PubMed and GenBank","display_name":"PubCrawler: keeping up comfortably with PubMed and GenBank","publication_year":2004,"publication_date":"2004-07-01","ids":{"openalex":"https://openalex.org/W2086383321","doi":"https://doi.org/10.1093/nar/gkh453","mag":"2086383321","pmid":"https://pubmed.ncbi.nlm.nih.gov/15215341"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh453","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W16/6211094/gkh453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W16/6211094/gkh453.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003377656","display_name":"Karsten Hokamp","orcid":"https://orcid.org/0000-0001-7464-2370"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"K. Hokamp","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada","Dept. of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Dept. of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058698418","display_name":"Kenneth H. Wolfe","orcid":"https://orcid.org/0000-0003-4992-4979"},"institutions":[{"id":"https://openalex.org/I205274468","display_name":"Trinity College Dublin","ror":"https://ror.org/02tyrky19","country_code":"IE","type":"education","lineage":["https://openalex.org/I205274468"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"K. H. Wolfe","raw_affiliation_strings":["Department of Genetics, University of Dublin, Trinity College, Dublin 2, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Dublin, Trinity College, Dublin 2, Ireland","institution_ids":["https://openalex.org/I205274468"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003377656"],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":7.2271,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.96669503,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"32","issue":"Web Server","first_page":"W16","last_page":"W19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9718000292778015,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.7964534759521484},{"id":"https://openalex.org/keywords/disk-formatting","display_name":"Disk formatting","score":0.742501974105835},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6522435545921326},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5934770107269287},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5336201190948486},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5089535713195801},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.43980327248573303},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43910038471221924},{"id":"https://openalex.org/keywords/web-browser","display_name":"Web browser","score":0.4167887568473816},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.32046276330947876},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1457962691783905},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12120702862739563}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.7964534759521484},{"id":"https://openalex.org/C88006597","wikidata":"https://www.wikidata.org/wiki/Q690117","display_name":"Disk formatting","level":2,"score":0.742501974105835},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6522435545921326},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5934770107269287},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5336201190948486},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5089535713195801},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.43980327248573303},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43910038471221924},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.4167887568473816},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.32046276330947876},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1457962691783905},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12120702862739563},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034742","descriptor_name":"Electronic Mail","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034742","descriptor_name":"Electronic Mail","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034742","descriptor_name":"Electronic Mail","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkh453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh453","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W16/6211094/gkh453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15215341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15215341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:162824","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC441591","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:441591","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/441591","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:http://www.rian.ie/88167/","is_oa":true,"landing_page_url":"http://hdl.handle.net/2262/40533","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hokamp, K., Wolfe, K.H., PubCrawler: keeping up comfortably with PubMed and GenBank, Nucleic Acids Res, 32, 2004, W16-W19","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh453","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W16/6211094/gkh453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2086383321.pdf","grobid_xml":"https://content.openalex.org/works/W2086383321.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1848220807","https://openalex.org/W1984876257","https://openalex.org/W2026010318","https://openalex.org/W2096525273","https://openalex.org/W2160206342","https://openalex.org/W4242739003"],"related_works":["https://openalex.org/W4244466418","https://openalex.org/W2104062382","https://openalex.org/W2162878363","https://openalex.org/W2389021890","https://openalex.org/W3023343521","https://openalex.org/W2146588098","https://openalex.org/W2479325685","https://openalex.org/W3183791698","https://openalex.org/W2084305201","https://openalex.org/W2033854691"],"abstract_inverted_index":{"The":[0,54],"free":[1],"PubCrawler":[2,92],"web":[3,32],"service":[4],"(http://www.pubcrawler.ie)":[5],"has":[6,15],"been":[7],"operating":[8],"for":[9,87,108],"five":[10],"years":[11],"and":[12,18,84,101],"so":[13],"far":[14],"brought":[16],"literature":[17],"sequence":[19],"updates":[20,73],"to":[21,51],"over":[22],"22":[23],"000":[24],"users.":[25,113],"It":[26],"provides":[27],"information":[28],"on":[29],"a":[30,109],"personalized":[31],"page":[33],"whenever":[34],"new":[35,42,81],"articles":[36],"appear":[37],"in":[38,46],"PubMed":[39],"or":[40,68],"when":[41],"sequences":[43],"are":[44,49],"found":[45],"GenBank":[47],"that":[48],"specific":[50],"customized":[52],"queries.":[53],"server":[55],"also":[56],"acts":[57],"as":[58,74,76],"an":[59],"automatic":[60],"alerting":[61],"system":[62],"by":[63],"sending":[64],"out":[65],"short":[66],"notifications":[67],"emails":[69],"with":[70,94],"the":[71,88],"latest":[72],"soon":[75],"they":[77],"become":[78],"available.":[79],"A":[80],"output":[82],"format":[83],"more":[85],"flexibility":[86],"email":[89],"formatting":[90],"help":[91],"cope":[93],"increasing":[95],"challenges":[96],"arising":[97],"from":[98],"browser":[99],"incompatibilities":[100],"mail":[102],"filters,":[103],"therefore":[104],"making":[105],"it":[106],"suitable":[107],"wide":[110],"range":[111],"of":[112]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
