{"id":"https://openalex.org/W2167222948","doi":"https://doi.org/10.1093/nar/gkh411","title":"PathBLAST: a tool for alignment of protein interaction networks","display_name":"PathBLAST: a tool for alignment of protein interaction networks","publication_year":2004,"publication_date":"2004-07-01","ids":{"openalex":"https://openalex.org/W2167222948","doi":"https://doi.org/10.1093/nar/gkh411","mag":"2167222948","pmid":"https://pubmed.ncbi.nlm.nih.gov/15215356"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh411","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh411","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W83/6209659/gkh411.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W83/6209659/gkh411.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090182413","display_name":"Brian Kelley","orcid":"https://orcid.org/0000-0001-6356-7133"},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B. P. Kelley","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA","Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,"],"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA","institution_ids":["https://openalex.org/I4210157710"]},{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075790845","display_name":"Bo Yuan","orcid":"https://orcid.org/0000-0001-7278-5116"},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Yuan","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,"],"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003927339","display_name":"F. Lewitter","orcid":"https://orcid.org/0000-0002-8583-6987"},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F. Lewitter","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,"],"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046958549","display_name":"Roded Sharan","orcid":"https://orcid.org/0000-0001-8363-4882"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Sharan","raw_affiliation_strings":["University of California at Berkeley, Berkeley, CA 94720, USA and"],"affiliations":[{"raw_affiliation_string":"University of California at Berkeley, Berkeley, CA 94720, USA and","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030207693","display_name":"Brent R. Stockwell","orcid":"https://orcid.org/0000-0002-3532-3868"},"institutions":[{"id":"https://openalex.org/I4210157710","display_name":"Whitehead Institute for Biomedical Research","ror":"https://ror.org/04vqm6w82","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210157710","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. R. Stockwell","raw_affiliation_strings":["Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,"],"affiliations":[{"raw_affiliation_string":"Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA,","institution_ids":["https://openalex.org/I4210157710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089373684","display_name":"Trey Ideker","orcid":"https://orcid.org/0000-0002-1708-8454"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Ideker","raw_affiliation_strings":["Department of Bioengineering, University of California at San Diego, La Jolla, CA 92093-0412, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California at San Diego, La Jolla, CA 92093-0412, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5090182413"],"corresponding_institution_ids":["https://openalex.org/I4210157710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":7.7175,"has_fulltext":true,"cited_by_count":426,"citation_normalized_percentile":{"value":0.98313827,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"32","issue":"Web Server","first_page":"W83","last_page":"W88"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.774297833442688},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.7380691766738892},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6715551018714905},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5867374539375305},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.5405186414718628},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5291804671287537},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.4873962998390198},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.4751175045967102},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.45463767647743225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42029866576194763},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4170073866844177},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.37483203411102295},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33910953998565674},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19204330444335938},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18904560804367065}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.774297833442688},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.7380691766738892},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6715551018714905},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5867374539375305},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5405186414718628},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5291804671287537},{"id":"https://openalex.org/C2780104201","wikidata":"https://www.wikidata.org/wiki/Q130888","display_name":"Drosophila melanogaster","level":3,"score":0.4873962998390198},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.4751175045967102},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.45463767647743225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42029866576194763},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4170073866844177},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.37483203411102295},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33910953998565674},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19204330444335938},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18904560804367065},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkh411","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh411","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W83/6209659/gkh411.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15215356","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15215356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.92.8812","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.92.8812","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-bioeng.ucsd.edu/faculty/area/ideker_lab/pdf/kelley2004.pdf","raw_type":"text"},{"id":"pmh:oai:academiccommons.columbia.edu:10.7916/D8639NKT","is_oa":false,"landing_page_url":"https://doi.org/10.7916/D8639NKT","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:441549","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/441549","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"doi:10.7916/d8639nkt","is_oa":true,"landing_page_url":"https://doi.org/10.7916/d8639nkt","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh411","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh411","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W83/6209659/gkh411.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/10"},{"display_name":"Peace, Justice and strong institutions","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G3617495587","display_name":"ITR/SY: Discrete Models & Algorithms in the Sciences","funder_award_id":"0121555","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8001024703","display_name":null,"funder_award_id":"CCR-0121555","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306133","display_name":"Burroughs Wellcome Fund","ror":"https://ror.org/01d35cw23"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167222948.pdf","grobid_xml":"https://content.openalex.org/works/W2167222948.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W187269661","https://openalex.org/W1977186059","https://openalex.org/W2023096047","https://openalex.org/W2026882865","https://openalex.org/W2029230311","https://openalex.org/W2037036397","https://openalex.org/W2040941311","https://openalex.org/W2065304353","https://openalex.org/W2084619201","https://openalex.org/W2085135852","https://openalex.org/W2094490516","https://openalex.org/W2104315543","https://openalex.org/W2106202847","https://openalex.org/W2113019448","https://openalex.org/W2113654464","https://openalex.org/W2118628540","https://openalex.org/W2125179362","https://openalex.org/W2126602684","https://openalex.org/W2130687290","https://openalex.org/W2132997183","https://openalex.org/W2141144953","https://openalex.org/W2152824658","https://openalex.org/W2156966633","https://openalex.org/W2158714788","https://openalex.org/W2159675211","https://openalex.org/W2167869241","https://openalex.org/W4248318091","https://openalex.org/W4255994287"],"related_works":["https://openalex.org/W1980411169","https://openalex.org/W4229728790","https://openalex.org/W2800059693","https://openalex.org/W2066232588","https://openalex.org/W4377086792","https://openalex.org/W2767490506","https://openalex.org/W1841073402","https://openalex.org/W2106286319","https://openalex.org/W2069244164","https://openalex.org/W3087302704"],"abstract_inverted_index":{"PathBLAST":[0,88,122,178],"is":[1,89],"a":[2,95,104,112,119,124,136],"network":[3,83,116,120,133,185],"alignment":[4],"and":[5,19,66,69,142,161],"search":[6],"tool":[7],"for":[8,31,40,71,109,154],"comparing":[9],"protein":[10,17,37,75,106,171],"interaction":[11,38,76,107,115,149],"networks":[12,150],"across":[13],"species":[14],"to":[15,81],"identify":[16],"pathways":[18,77],"complexes":[20],"that":[21],"have":[22],"been":[23],"conserved":[24],"by":[25],"evolution.":[26],"The":[27],"basic":[28],"method":[29],"searches":[30],"high-scoring":[32],"alignments":[33],"between":[34,64,173],"pairs":[35],"of":[36,43,74,84,127,139,170],"paths,":[39],"which":[41],"proteins":[42],"the":[44,54,58,82,101,131,143,184],"first":[45],"path":[46,108],"are":[47,151,179],"paired":[48],"with":[49,135],"putative":[50],"orthologs":[51],"occurring":[52],"in":[53,57],"same":[55],"order":[56],"second":[59],"path.":[60],"This":[61],"technique":[62],"discriminates":[63],"true-":[65],"false-positive":[67],"interactions":[68],"allows":[70],"functional":[72],"annotation":[73],"based":[78],"on":[79],"similarity":[80],"another,":[85],"well-characterized":[86],"species.":[87],"now":[90],"available":[91,153],"at":[92,183],"http://www.pathblast.org/":[93],"as":[94,165,177],"web-based":[96],"query.":[97],"In":[98],"this":[99],"implementation,":[100],"user":[102],"specifies":[103],"short":[105],"query":[110],"against":[111],"target":[113,132],"protein-protein":[114,148],"selected":[117],"from":[118,130],"database.":[121],"returns":[123],"ranked":[125],"list":[126],"matching":[128],"paths":[129,141],"along":[134],"graphical":[137],"view":[138],"these":[140],"overlap":[144],"among":[145],"them.":[146],"Target":[147],"currently":[152],"Helicobacter":[155],"pylori,":[156],"Saccharomyces":[157],"cerevisiae,":[158],"Caenorhabditis":[159],"elegans":[160],"Drosophila":[162],"melanogaster.":[163],"Just":[164],"BLAST":[166],"enables":[167],"rapid":[168],"comparison":[169],"sequences":[172],"genomes,":[174],"tools":[175],"such":[176],"enabling":[180],"comparative":[181],"genomics":[182],"level.":[186]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":20},{"year":2017,"cited_by_count":37},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":24},{"year":2014,"cited_by_count":31},{"year":2013,"cited_by_count":30},{"year":2012,"cited_by_count":30}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
