{"id":"https://openalex.org/W2149649966","doi":"https://doi.org/10.1093/nar/gkh378","title":"PrediSi: prediction of signal peptides and their cleavage positions","display_name":"PrediSi: prediction of signal peptides and their cleavage positions","publication_year":2004,"publication_date":"2004-07-01","ids":{"openalex":"https://openalex.org/W2149649966","doi":"https://doi.org/10.1093/nar/gkh378","mag":"2149649966","pmid":"https://pubmed.ncbi.nlm.nih.gov/15215414"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh378","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W375/6208329/gkh378.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W375/6208329/gkh378.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077222776","display_name":"Karsten Hiller","orcid":"https://orcid.org/0000-0001-9322-5820"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"K. Hiller","raw_affiliation_strings":["Institut f\u00fcr Mikrobiologie, Technische Universit\u00e4t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany","Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Mikrobiologie, Technische Universit\u00e4t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085724695","display_name":"Andreas Grote","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. Grote","raw_affiliation_strings":["Institut fu r Mikrobiologie, Technische Universita t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and"],"affiliations":[{"raw_affiliation_string":"Institut fu r Mikrobiologie, Technische Universita t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005480531","display_name":"Maurice Scheer","orcid":null},"institutions":[{"id":"https://openalex.org/I2799859273","display_name":"Ostfalia University of Applied Sciences","ror":"https://ror.org/01bk10867","country_code":"DE","type":"education","lineage":["https://openalex.org/I2799859273"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Scheer","raw_affiliation_strings":["Fachbereich fu r Informatik, Fachhochschule Wolfenbu ttel, Am Exer, D-38302 Wolfenbu ttel, Germany","Institut fu r Mikrobiologie, Technische Universita t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","Fachbereich fu \u00a8r Informatik, Fachhochschule Wolfenbu \u00a8ttel, Am Exer, D-38302 Wolfenbu \u00a8ttel, Germany"],"affiliations":[{"raw_affiliation_string":"Fachbereich fu r Informatik, Fachhochschule Wolfenbu ttel, Am Exer, D-38302 Wolfenbu ttel, Germany","institution_ids":["https://openalex.org/I2799859273"]},{"raw_affiliation_string":"Institut fu r Mikrobiologie, Technische Universita t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Fachbereich fu \u00a8r Informatik, Fachhochschule Wolfenbu \u00a8ttel, Am Exer, D-38302 Wolfenbu \u00a8ttel, Germany","institution_ids":["https://openalex.org/I2799859273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109332116","display_name":"Richard M\u00fcnch","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"R. Munch","raw_affiliation_strings":["Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and"],"affiliations":[{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041916369","display_name":"Dieter Jahn","orcid":"https://orcid.org/0000-0002-4064-9205"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"D. Jahn","raw_affiliation_strings":["Institut fu r Mikrobiologie, Technische Universita t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and"],"affiliations":[{"raw_affiliation_string":"Institut fu r Mikrobiologie, Technische Universita t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, D-38106 Braunschweig, Germany and","institution_ids":["https://openalex.org/I94509681"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077222776"],"corresponding_institution_ids":["https://openalex.org/I94509681"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.3056,"has_fulltext":true,"cited_by_count":502,"citation_normalized_percentile":{"value":0.96609877,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"32","issue":"Web Server","first_page":"W375","last_page":"W379"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7543730735778809},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6728202104568481},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6420564651489258},{"id":"https://openalex.org/keywords/signal-peptide","display_name":"Signal peptide","score":0.547437846660614},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5452895164489746},{"id":"https://openalex.org/keywords/protein-methods","display_name":"Protein methods","score":0.5074273943901062},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.4936717450618744},{"id":"https://openalex.org/keywords/web-browser","display_name":"Web browser","score":0.43058642745018005},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4211711883544922},{"id":"https://openalex.org/keywords/protein-sorting-signals","display_name":"Protein Sorting Signals","score":0.4127545952796936},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36334946751594543},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3572543263435364},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1943422555923462},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08304110169410706},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.07875260710716248},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.07090947031974792}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7543730735778809},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6728202104568481},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6420564651489258},{"id":"https://openalex.org/C10858879","wikidata":"https://www.wikidata.org/wiki/Q899790","display_name":"Signal peptide","level":4,"score":0.547437846660614},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5452895164489746},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.5074273943901062},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.4936717450618744},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.43058642745018005},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4211711883544922},{"id":"https://openalex.org/C2908929163","wikidata":"https://www.wikidata.org/wiki/Q658882","display_name":"Protein Sorting Signals","level":5,"score":0.4127545952796936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36334946751594543},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3572543263435364},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1943422555923462},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08304110169410706},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.07875260710716248},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.07090947031974792},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D021382","descriptor_name":"Protein Sorting Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021382","descriptor_name":"Protein Sorting Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021382","descriptor_name":"Protein Sorting Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkh378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh378","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W375/6208329/gkh378.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15215414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15215414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.108.6599","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.108.6599","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/32/suppl_2/W375.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:162756","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC441516","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:orbilu.uni.lu:10993/17747","is_oa":false,"landing_page_url":"https://orbilu.uni.lu/handle/10993/17747","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research. Oxford, United Kingdom: Oxford University Press (2004).","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:441516","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/441516","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh378","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W375/6208329/gkh378.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.46000000834465027,"display_name":"Partnerships for the goals"},{"id":"https://metadata.un.org/sdg/9","score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149649966.pdf","grobid_xml":"https://content.openalex.org/works/W2149649966.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W171398818","https://openalex.org/W2041877620","https://openalex.org/W2062492647","https://openalex.org/W2099616208","https://openalex.org/W2105495791","https://openalex.org/W2111086397","https://openalex.org/W2144615694","https://openalex.org/W2148853951","https://openalex.org/W2153671224","https://openalex.org/W2170219629","https://openalex.org/W2171091522","https://openalex.org/W2171709077","https://openalex.org/W4254238460"],"related_works":["https://openalex.org/W1829364434","https://openalex.org/W2010230246","https://openalex.org/W2734424435","https://openalex.org/W2044658288","https://openalex.org/W2046620625","https://openalex.org/W2061503607","https://openalex.org/W158877012","https://openalex.org/W2008727634","https://openalex.org/W2130320320","https://openalex.org/W1970964125"],"abstract_inverted_index":{"We":[0],"have":[1],"developed":[2],"PrediSi":[3,51,117,134],"(Prediction":[4],"of":[5,42,55,66,113,133],"Signal":[6],"peptides),":[7],"a":[8,64,79,86,121],"new":[9,34],"tool":[10,140],"for":[11,39,130],"predicting":[12],"signal":[13],"peptide":[14],"sequences":[15,106],"and":[16,22,70],"their":[17],"cleavage":[18],"positions":[19],"in":[20,45,91,99],"bacterial":[21],"eukaryotic":[23],"amino":[24,95],"acid":[25,96],"sequences.":[26],"In":[27],"contrast":[28],"to":[29,92],"previous":[30],"prediction":[31],"tools,":[32],"our":[33],"software":[35,102,137],"is":[36,76,118,141],"especially":[37],"useful":[38],"the":[40,53,94,109,114,131,145],"analysis":[41],"large":[43],"datasets":[44],"real":[46],"time":[47],"with":[48],"high":[49],"accuracy.":[50],"allows":[52],"evaluation":[54],"whole":[56],"proteome":[57],"datasets,":[58],"which":[59,89],"are":[60],"currently":[61],"accumulating":[62],"as":[63],"result":[65],"numerous":[67],"genome":[68],"projects":[69],"proteomics":[71],"experiments.":[72],"The":[73,101,139],"method":[74],"employed":[75],"based":[77],"on":[78,144],"position":[80],"weight":[81],"matrix":[82],"approach":[83],"improved":[84],"by":[85],"frequency":[87],"correction":[88],"takes":[90],"consideration":[93],"bias":[97],"present":[98],"proteins.":[100],"was":[103,128],"trained":[104],"using":[105],"extracted":[107],"from":[108],"most":[110],"recent":[111],"version":[112],"SwissProt":[115],"database.":[116],"accessible":[119],"via":[120],"web":[122],"interface.":[123],"An":[124],"extra":[125],"Java":[126],"package":[127],"designed":[129],"integration":[132],"into":[135],"other":[136],"projects.":[138],"freely":[142],"available":[143],"World":[146],"Wide":[147],"Web":[148],"at":[149],"http://www.predisi.de.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":29},{"year":2020,"cited_by_count":35},{"year":2019,"cited_by_count":33},{"year":2018,"cited_by_count":38},{"year":2017,"cited_by_count":27},{"year":2016,"cited_by_count":27},{"year":2015,"cited_by_count":26},{"year":2014,"cited_by_count":24},{"year":2013,"cited_by_count":24},{"year":2012,"cited_by_count":18}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
