{"id":"https://openalex.org/W2168047961","doi":"https://doi.org/10.1093/nar/gkh375","title":"iMOT: an interactive package for the selection of spatially interacting motifs","display_name":"iMOT: an interactive package for the selection of spatially interacting motifs","publication_year":2004,"publication_date":"2004-07-01","ids":{"openalex":"https://openalex.org/W2168047961","doi":"https://doi.org/10.1093/nar/gkh375","mag":"2168047961","pmid":"https://pubmed.ncbi.nlm.nih.gov/15215459"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh375","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh375","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W602/6208269/gkh375.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W602/6208269/gkh375.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102886252","display_name":"Anirban Bhaduri","orcid":"https://orcid.org/0000-0002-1567-1822"},"institutions":[{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"A. Bhaduri","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India","National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India and"],"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India","institution_ids":[]},{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India and","institution_ids":["https://openalex.org/I194223965","https://openalex.org/I11947397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006893514","display_name":"Ganesan Pugalenthi","orcid":"https://orcid.org/0000-0002-5234-5700"},"institutions":[{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"G. Pugalenthi","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India and"],"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India and","institution_ids":["https://openalex.org/I194223965","https://openalex.org/I11947397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073422357","display_name":"Nitin Gupta","orcid":"https://orcid.org/0000-0002-8408-3848"},"institutions":[{"id":"https://openalex.org/I94234084","display_name":"Indian Institute of Technology Kanpur","ror":"https://ror.org/05pjsgx75","country_code":"IN","type":"education","lineage":["https://openalex.org/I94234084"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"N. Gupta","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology, Kanpur 208016, Uttar Pradesh, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology, Kanpur 208016, Uttar Pradesh, India","institution_ids":["https://openalex.org/I94234084"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076779054","display_name":"Ramanathan Sowdhamini","orcid":"https://orcid.org/0000-0002-6642-2367"},"institutions":[{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]},{"id":"https://openalex.org/I11947397","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27","country_code":"IN","type":"education","lineage":["https://openalex.org/I11947397","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"R. Sowdhamini","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India and"],"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research, UAS-GKVK Campus, Bellary Road, Bangalore 560 065, Karnataka, India and","institution_ids":["https://openalex.org/I194223965","https://openalex.org/I11947397"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102886252"],"corresponding_institution_ids":["https://openalex.org/I11947397","https://openalex.org/I194223965"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.6029,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.661911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"32","issue":"Web Server","first_page":"W602","last_page":"W605"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8086423873901367},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6431736946105957},{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.5574279427528381},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5508129000663757},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5319808721542358},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5017342567443848},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.48441770672798157},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4635903239250183},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.45799216628074646},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.4445221424102783},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4426402747631073},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4335172176361084},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.42455506324768066},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41721975803375244},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34481436014175415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25930511951446533},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.20595437288284302},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13108095526695251},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11639457941055298},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08530133962631226}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8086423873901367},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6431736946105957},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.5574279427528381},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5508129000663757},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5319808721542358},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5017342567443848},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.48441770672798157},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4635903239250183},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.45799216628074646},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.4445221424102783},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4426402747631073},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4335172176361084},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.42455506324768066},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41721975803375244},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34481436014175415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25930511951446533},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.20595437288284302},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13108095526695251},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11639457941055298},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08530133962631226},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017027","descriptor_name":"Protein Tyrosine Phosphatases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D017027","descriptor_name":"Protein Tyrosine Phosphatases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D017027","descriptor_name":"Protein Tyrosine Phosphatases","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkh375","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh375","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W602/6208269/gkh375.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15215459","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15215459","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.910.4613","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.910.4613","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/32/suppl_2/W602.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.96.8719","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.96.8719","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/32/suppl_2/W602.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:162753","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC441513","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:441513","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/441513","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh375","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh375","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W602/6208269/gkh375.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","id":"https://metadata.un.org/sdg/1","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320715","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27"},{"id":"https://openalex.org/F4320335065","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168047961.pdf","grobid_xml":"https://content.openalex.org/works/W2168047961.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W64749174","https://openalex.org/W1485790693","https://openalex.org/W1508885706","https://openalex.org/W1533208683","https://openalex.org/W1979865908","https://openalex.org/W1982496832","https://openalex.org/W1982597966","https://openalex.org/W1997379747","https://openalex.org/W1999271199","https://openalex.org/W2004178884","https://openalex.org/W2005313213","https://openalex.org/W2012641834","https://openalex.org/W2045777307","https://openalex.org/W2072008026","https://openalex.org/W2076861723","https://openalex.org/W2085277871","https://openalex.org/W2094039395","https://openalex.org/W2098854471","https://openalex.org/W2099235960","https://openalex.org/W2135051747","https://openalex.org/W2140524371","https://openalex.org/W2155878537","https://openalex.org/W2156899368","https://openalex.org/W2158714788","https://openalex.org/W2283417531","https://openalex.org/W2770759723","https://openalex.org/W4247074653"],"related_works":["https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2159636084","https://openalex.org/W2117168988","https://openalex.org/W2103777723","https://openalex.org/W2610941444","https://openalex.org/W2181549235","https://openalex.org/W1973727281","https://openalex.org/W4313374487"],"abstract_inverted_index":{"Functional":[0],"selection":[1],"and":[2,21,28,58,111,136],"three-dimensional":[3],"structural":[4],"constraints":[5],"of":[6,12,18,35,47,68,75,81,90,95,130],"proteins":[7,17,54],"relate":[8],"to":[9,103],"the":[10,33,44,79,87,116],"retention":[11],"significant":[13],"sequence":[14,26],"similarity":[15],"between":[16,65],"similar":[19,56],"fold":[20],"function":[22],"despite":[23],"poor":[24],"overall":[25],"identity":[27],"evolutionary":[29],"pressures.":[30],"We":[31],"report":[32],"availability":[34],"'iMOT'":[36],"(interacting":[37],"MOTif)":[38],"server,":[39],"an":[40,84],"interactive":[41],"package":[42],"for":[43,108],"automatic":[45,88],"identification":[46,89],"spatially":[48],"interacting":[49,92],"motifs":[50,99,126],"among":[51,115],"distantly":[52],"related":[53],"sharing":[55],"folds":[57],"possessing":[59],"common":[60],"ancestral":[61],"lineage.":[62],"Spatial":[63],"interactions":[64],"conserved":[66,93],"stretches":[67],"a":[69,96],"protein":[70,133],"are":[71],"evaluated":[72],"by":[73],"calculations":[74],"pseudo-potentials":[76],"that":[77],"describe":[78],"strength":[80],"interactions.":[82],"Such":[83],"evaluation":[85],"permits":[86],"highly":[91],"regions":[94],"protein.":[97],"Interacting":[98],"have":[100],"been":[101],"shown":[102],"be":[104,129,143,150],"useful":[105],"in":[106,120,132],"searching":[107],"distant":[109],"homologues":[110],"establishing":[112],"remote":[113],"homologies":[114],"largely":[117],"unassigned":[118],"sequences":[119],"genome":[121],"databases.":[122],"Information":[123],"on":[124],"such":[125],"should":[127],"also":[128],"value":[131],"folding,":[134],"modelling":[135],"engineering":[137],"experiments.":[138],"The":[139],"iMOT":[140],"server":[141],"can":[142,149],"accessed":[144,151],"from":[145],"http://www.ncbs.res.in/~faculty/mini/imot/iMOTserver.html.":[146],"Supplementary":[147],"Material":[148],"from:":[152],"http://www.ncbs.res.in/~faculty/mini/imot/supplementary.html.":[153]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}