{"id":"https://openalex.org/W2170250614","doi":"https://doi.org/10.1093/nar/gkh357","title":"Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices","display_name":"Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices","publication_year":2004,"publication_date":"2004-07-01","ids":{"openalex":"https://openalex.org/W2170250614","doi":"https://doi.org/10.1093/nar/gkh357","mag":"2170250614","pmid":"https://pubmed.ncbi.nlm.nih.gov/15215443"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh357","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W532/6207381/gkh357.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W532/6207381/gkh357.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002244022","display_name":"Andrew E. Torda","orcid":"https://orcid.org/0000-0002-6076-709X"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","DE"],"is_corresponding":true,"raw_author_name":"A. E. Torda","raw_affiliation_strings":["University of Hamburg, Zentrum f\u00fcr Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany","Departments of Mathematics and Biochemistry, University of Queensland, Brisbane, QLD 4072, Australia","University of Hamburg, Zentrum f\u20ac u ur Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Hamburg, Zentrum f\u00fcr Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Departments of Mathematics and Biochemistry, University of Queensland, Brisbane, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"University of Hamburg, Zentrum f\u20ac u ur Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany and","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023826543","display_name":"James B Procter","orcid":"https://orcid.org/0000-0002-7865-7382"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","DE"],"is_corresponding":false,"raw_author_name":"J. B. Procter","raw_affiliation_strings":["Departments of Mathematics and Biochemistry, University of Queensland, Brisbane, QLD 4072, Australia","University of Hamburg, Zentrum f\u20ac u ur Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Mathematics and Biochemistry, University of Queensland, Brisbane, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"University of Hamburg, Zentrum f\u20ac u ur Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany and","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076677952","display_name":"Thomas Huber","orcid":"https://orcid.org/0000-0002-3680-8699"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","DE"],"is_corresponding":false,"raw_author_name":"T. Huber","raw_affiliation_strings":["Departments of Mathematics and Biochemistry, University of Queensland, Brisbane, QLD 4072, Australia","University of Hamburg, Zentrum f\u20ac u ur Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Mathematics and Biochemistry, University of Queensland, Brisbane, QLD 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"University of Hamburg, Zentrum f\u20ac u ur Bioinformatik, Bundesstrasse 43, D-20146 Hamburg, Germany and","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002244022"],"corresponding_institution_ids":["https://openalex.org/I159176309","https://openalex.org/I165143802"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":null,"fwci":1.8261,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.84545872,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"32","issue":"Web Server","first_page":"W532","last_page":"W535"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.8542026281356812},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.6787814497947693},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6455891728401184},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5976374745368958},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5645219087600708},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.5148824453353882},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.506697952747345},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5024659633636475},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4408630132675171},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.42994001507759094},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41904884576797485},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.38973137736320496},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3652912974357605},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35562628507614136},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25530484318733215},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.10994270443916321}],"concepts":[{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.8542026281356812},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.6787814497947693},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6455891728401184},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5976374745368958},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5645219087600708},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.5148824453353882},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.506697952747345},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5024659633636475},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4408630132675171},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.42994001507759094},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41904884576797485},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.38973137736320496},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3652912974357605},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35562628507614136},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25530484318733215},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.10994270443916321},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkh357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh357","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W532/6207381/gkh357.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15215443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15215443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:162736","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC441495","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:441495","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/441495","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:73408","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh357","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh357","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_2/W532/6207381/gkh357.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170250614.pdf","grobid_xml":"https://content.openalex.org/works/W2170250614.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W21816278","https://openalex.org/W1524704912","https://openalex.org/W1965860531","https://openalex.org/W1971048099","https://openalex.org/W1998072661","https://openalex.org/W2000076519","https://openalex.org/W2001956250","https://openalex.org/W2003853681","https://openalex.org/W2018457944","https://openalex.org/W2033496784","https://openalex.org/W2040594319","https://openalex.org/W2044122969","https://openalex.org/W2049633694","https://openalex.org/W2051019453","https://openalex.org/W2057289558","https://openalex.org/W2070955689","https://openalex.org/W2082169035","https://openalex.org/W2082621844","https://openalex.org/W2087064593","https://openalex.org/W2097555181","https://openalex.org/W2099075703","https://openalex.org/W2102122585","https://openalex.org/W2107103206","https://openalex.org/W2130479394","https://openalex.org/W2137303465","https://openalex.org/W2140244239","https://openalex.org/W2142727530","https://openalex.org/W2143210482","https://openalex.org/W2144483796","https://openalex.org/W2147059525","https://openalex.org/W2151831732","https://openalex.org/W2153414768","https://openalex.org/W2154106236","https://openalex.org/W2155972356","https://openalex.org/W2158714788","https://openalex.org/W2164308539","https://openalex.org/W2164864731","https://openalex.org/W2601913882","https://openalex.org/W3146331408","https://openalex.org/W3147254695","https://openalex.org/W4253936542"],"related_works":["https://openalex.org/W1741740882","https://openalex.org/W24291664","https://openalex.org/W2070955689","https://openalex.org/W1517280616","https://openalex.org/W2263295597","https://openalex.org/W2170250614","https://openalex.org/W1594583051","https://openalex.org/W2406523068","https://openalex.org/W2157930580","https://openalex.org/W2140187548"],"abstract_inverted_index":{"Wurst":[0],"is":[1],"a":[2,28,35,48,59],"protein":[3],"threading":[4],"program":[5],"with":[6,27,38,98],"an":[7],"emphasis":[8],"on":[9],"high":[10],"quality":[11,80],"sequence":[12,42,52,85,93,99],"to":[13,21,53,68,82],"structure":[14,40,45,54],"alignments":[15],"(http://www.zbh.uni-hamburg.de/wurst).":[16],"Submitted":[17],"sequences":[18],"are":[19,47],"aligned":[20],"each":[22,90],"of":[23,51,76],"about":[24],"3000":[25],"templates":[26],"conventional":[29],"dynamic":[30],"programming":[31],"algorithm,":[32],"but":[33],"using":[34],"score":[36],"function":[37],"sophisticated":[39],"and":[41,78,81,86,94],"terms.":[43],"The":[44],"terms":[46,72,96],"log-odds":[49],"probability":[50],"fragment":[55],"compatibility,":[56],"obtained":[57],"from":[58],"Bayesian":[60],"classification":[61],"procedure.":[62],"A":[63],"simplex":[64],"optimization":[65],"was":[66],"used":[67],"optimize":[69],"the":[70,74,84],"sequence-based":[71],"for":[73],"goal":[75],"alignment":[77],"model":[79],"balance":[83],"structural":[87,95],"contributions":[88],"against":[89],"other.":[91],"Both":[92],"operate":[97],"profiles.":[100]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
