{"id":"https://openalex.org/W2072849975","doi":"https://doi.org/10.1093/nar/gkh127","title":"DDBJ in the stream of various biological data","display_name":"DDBJ in the stream of various biological data","publication_year":2003,"publication_date":"2003-12-17","ids":{"openalex":"https://openalex.org/W2072849975","doi":"https://doi.org/10.1093/nar/gkh127","mag":"2072849975","pmid":"https://pubmed.ncbi.nlm.nih.gov/14681352"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh127","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D31/7622115/gkh127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D31/7622115/gkh127.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017921849","display_name":"Satoru Miyazaki","orcid":"https://orcid.org/0000-0001-8803-7980"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"S. Miyazaki","raw_affiliation_strings":["Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima 411-8540, Japan","Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima 411\u20108540, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima 411-8540, Japan","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]},{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima 411\u20108540, Japan","institution_ids":["https://openalex.org/I47232531","https://openalex.org/I113198587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5017921849"],"corresponding_institution_ids":["https://openalex.org/I113198587","https://openalex.org/I47232531"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":4.5756,"has_fulltext":true,"cited_by_count":92,"citation_normalized_percentile":{"value":0.95616851,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"32","issue":"90001","first_page":"31D","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8160151243209839},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4416177570819855},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39977389574050903},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3571476936340332},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3495936691761017},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3208003342151642},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.23494860529899597},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.213308185338974},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15428003668785095}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8160151243209839},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4416177570819855},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39977389574050903},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3571476936340332},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3495936691761017},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3208003342151642},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.23494860529899597},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.213308185338974},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15428003668785095}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkh127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh127","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D31/7622115/gkh127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:14681352","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14681352","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.515.8303","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.515.8303","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.dbbm.fiocruz.br/labwim/cursos/acsnp/articles/ddbj in the stream of various biological data.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:161284","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC308861","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:308861","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/308861","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh127","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D31/7622115/gkh127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2072849975.pdf","grobid_xml":"https://content.openalex.org/works/W2072849975.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1465261593","https://openalex.org/W1497954397","https://openalex.org/W1981653927","https://openalex.org/W2007550282","https://openalex.org/W2029195137","https://openalex.org/W2055043387","https://openalex.org/W2068419309","https://openalex.org/W2076393526","https://openalex.org/W2083737836","https://openalex.org/W2129842297","https://openalex.org/W2135677342","https://openalex.org/W2158714788","https://openalex.org/W2167272207","https://openalex.org/W2168909179","https://openalex.org/W2297165308","https://openalex.org/W2614575602","https://openalex.org/W2949977409","https://openalex.org/W4236236547","https://openalex.org/W4255886388"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W193851735","https://openalex.org/W3178279768","https://openalex.org/W2773861473","https://openalex.org/W1971903861","https://openalex.org/W3047903919"],"abstract_inverted_index":{"In":[0],"the":[1,15,25,33,39,48,77],"past":[2],"year":[3],"we":[4],"at":[5],"DDBJ":[6],"(http://www.ddbj.nig.":[7],"ac.jp)":[8],"have":[9,96],"made":[10],"a":[11,21,57,85],"steady":[12],"increase":[13],"in":[14,24,32],"number":[16,26,34,87],"of":[17,27,35,42,79,88],"data":[18,41,81,90],"submissions":[19],"with":[20],"50.6%":[22],"increment":[23,31],"bases":[28],"or":[29],"46.5%":[30],"entries.":[36],"Among":[37],"them":[38],"genome":[40],"man,":[43],"ascidian":[44],"and":[45,66,72,82],"rice":[46],"hold":[47],"top":[49],"three.":[50],"Our":[51],"activity":[52],"has":[53],"extended":[54],"to":[55,67,75],"providing":[56],"tool":[58],"that":[59],"enables":[60],"sequence":[61],"retrieval":[62],"using":[63],"regular":[64],"expressions,":[65],"launching":[68],"our":[69,99],"SOAP":[70],"server":[71],"web":[73],"services":[74],"facilitate":[76],"acquisition":[78],"proper":[80],"tools":[83],"from":[84],"huge":[86],"biological":[89],"resources":[91],"on":[92],"websites":[93],"worldwide.":[94],"We":[95],"also":[97],"opened":[98],"public":[100],"gene":[101],"expression":[102],"database,":[103],"CIBEX.":[104]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
