{"id":"https://openalex.org/W2108871359","doi":"https://doi.org/10.1093/nar/gkh103","title":"The UCSC Table Browser data retrieval tool","display_name":"The UCSC Table Browser data retrieval tool","publication_year":2003,"publication_date":"2003-12-18","ids":{"openalex":"https://openalex.org/W2108871359","doi":"https://doi.org/10.1093/nar/gkh103","mag":"2108871359","pmid":"https://pubmed.ncbi.nlm.nih.gov/14681465"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh103","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D493/7621914/gkh103.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D493/7621914/gkh103.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076917634","display_name":"Donna Karolchik","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Karolchik","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA. donnak@soe.ucsc.edu","Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA. donnak@soe.ucsc.edu","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5076917634"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":8.6932,"has_fulltext":true,"cited_by_count":2521,"citation_normalized_percentile":{"value":0.98600568,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"32","issue":"90001","first_page":"493D","last_page":"496"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.9052237272262573},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7348831295967102},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7092158198356628},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.6498805284500122},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6254910230636597},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5306942462921143},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.4432951509952545},{"id":"https://openalex.org/keywords/sql","display_name":"SQL","score":0.44088250398635864},{"id":"https://openalex.org/keywords/web-browser","display_name":"Web browser","score":0.4132128357887268},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40840327739715576},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3895234167575836},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38250720500946045},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.35762012004852295},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3246166706085205},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.22513684630393982},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09450891613960266}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9052237272262573},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7348831295967102},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7092158198356628},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.6498805284500122},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6254910230636597},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5306942462921143},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.4432951509952545},{"id":"https://openalex.org/C510870499","wikidata":"https://www.wikidata.org/wiki/Q47607","display_name":"SQL","level":2,"score":0.44088250398635864},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.4132128357887268},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40840327739715576},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3895234167575836},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38250720500946045},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.35762012004852295},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3246166706085205},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.22513684630393982},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09450891613960266},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkh103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh103","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D493/7621914/gkh103.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:14681465","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14681465","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.104.6164","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.104.6164","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/32/suppl_1/D493.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:308837","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/308837","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh103","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D493/7621914/gkh103.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G187451341","display_name":null,"funder_award_id":"Fellow","funder_id":"https://openalex.org/F4320306082","funder_display_name":"Howard Hughes Medical Institute"},{"id":"https://openalex.org/G845722000","display_name":null,"funder_award_id":"(HHMI)","funder_id":"https://openalex.org/F4320306082","funder_display_name":"Howard Hughes Medical Institute"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108871359.pdf","grobid_xml":"https://content.openalex.org/works/W2108871359.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1984195830","https://openalex.org/W2053276922","https://openalex.org/W2057998009","https://openalex.org/W2122598328","https://openalex.org/W2128016314","https://openalex.org/W2151464048","https://openalex.org/W2152775760","https://openalex.org/W2166444569","https://openalex.org/W2168783124","https://openalex.org/W4292158482"],"related_works":["https://openalex.org/W2139297998","https://openalex.org/W2804921183","https://openalex.org/W3109437984","https://openalex.org/W2462807523","https://openalex.org/W2274932919","https://openalex.org/W4387264054","https://openalex.org/W2152320398","https://openalex.org/W2096403311","https://openalex.org/W2118218075","https://openalex.org/W2113368041"],"abstract_inverted_index":{"The":[0,114],"University":[1],"of":[2,17,43,79],"California":[3],"Santa":[4],"Cruz":[5],"(UCSC)":[6],"Table":[7,115],"Browser":[8,27,109,116],"(http://genome.ucsc.edu/cgi-bin/hgText)":[9],"provides":[10,124],"text-based":[11],"access":[12],"to":[13,32,66],"a":[14,83,93],"large":[15],"collection":[16],"genome":[18],"assemblies":[19],"and":[20,56,70,73,126,132],"annotation":[21,112],"data":[22],"stored":[23],"in":[24],"the":[25,33,68,107,121],"Genome":[26,35,108],"Database.":[28],"A":[29],"flexible":[30],"alternative":[31],"graphical-based":[34],"Browser,":[36],"this":[37],"tool":[38],"offers":[39],"an":[40],"enhanced":[41],"level":[42],"query":[44],"support":[45],"that":[46,88,102],"includes":[47],"restrictions":[48],"based":[49],"on":[50,59,120],"field":[51],"values,":[52],"free-form":[53],"SQL":[54],"queries":[55,58,131],"combined":[57],"multiple":[60],"tables.":[61],"Output":[62],"can":[63,89],"be":[64,75,90,104],"filtered":[65],"restrict":[67],"fields":[69],"lines":[71],"returned,":[72],"may":[74,103],"organized":[76],"into":[77,92,106],"one":[78],"several":[80],"formats,":[81],"including":[82],"simple":[84],"tab-":[85],"delimited":[86],"file":[87],"loaded":[91],"spreadsheet":[94],"or":[95],"database":[96],"as":[97,99,110],"well":[98],"advanced":[100],"formats":[101],"uploaded":[105],"custom":[111],"tracks.":[113],"User's":[117],"Guide":[118],"located":[119],"UCSC":[122],"website":[123],"instructions":[125],"detailed":[127],"examples":[128],"for":[129],"constructing":[130],"configuring":[133],"output.":[134]},"counts_by_year":[{"year":2026,"cited_by_count":34},{"year":2025,"cited_by_count":106},{"year":2024,"cited_by_count":196},{"year":2023,"cited_by_count":194},{"year":2022,"cited_by_count":201},{"year":2021,"cited_by_count":180},{"year":2020,"cited_by_count":197},{"year":2019,"cited_by_count":186},{"year":2018,"cited_by_count":173},{"year":2017,"cited_by_count":163},{"year":2016,"cited_by_count":126},{"year":2015,"cited_by_count":123},{"year":2014,"cited_by_count":108},{"year":2013,"cited_by_count":89},{"year":2012,"cited_by_count":84}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
