{"id":"https://openalex.org/W2171154676","doi":"https://doi.org/10.1093/nar/gkh046","title":"PlantGDB, plant genome database and analysis tools","display_name":"PlantGDB, plant genome database and analysis tools","publication_year":2003,"publication_date":"2003-12-18","ids":{"openalex":"https://openalex.org/W2171154676","doi":"https://doi.org/10.1093/nar/gkh046","mag":"2171154676","pmid":"https://pubmed.ncbi.nlm.nih.gov/14681433"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh046","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D354/7621427/gkh046.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D354/7621427/gkh046.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088669922","display_name":"Qunfeng Dong","orcid":"https://orcid.org/0000-0002-4610-1670"},"institutions":[{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]},{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Q. Dong","raw_affiliation_strings":["Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011-3260, USA","Department of Genetics, Development and Cell Biology and"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011-3260, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology and","institution_ids":["https://openalex.org/I4210118410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5088669922"],"corresponding_institution_ids":["https://openalex.org/I173911158","https://openalex.org/I4210118410"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":18.4303,"has_fulltext":true,"cited_by_count":229,"citation_normalized_percentile":{"value":0.99266411,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"32","issue":"90001","first_page":"354D","last_page":"359"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9449008703231812},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6155413389205933},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5107522010803223},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4120182991027832},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33521974086761475},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1504644751548767},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07161456346511841}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9449008703231812},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6155413389205933},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5107522010803223},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4120182991027832},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33521974086761475},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1504644751548767},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07161456346511841}],"mesh":[{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkh046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh046","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D354/7621427/gkh046.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:14681433","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14681433","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.2350","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.2350","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/32/suppl_1/D354.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:161218","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC308780","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:308780","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/308780","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh046","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D354/7621427/gkh046.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6600000262260437}],"awards":[{"id":"https://openalex.org/G762291340","display_name":"PlantGDB - Plant Genome Database and Analysis Tools","funder_award_id":"0321600","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8706663352","display_name":"PlantGDB - Plant Genome Database and Analysis Tools","funder_award_id":"0110254","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171154676.pdf","grobid_xml":"https://content.openalex.org/works/W2171154676.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1494075612","https://openalex.org/W1971403296","https://openalex.org/W1974116722","https://openalex.org/W2020240988","https://openalex.org/W2065735621","https://openalex.org/W2104189907","https://openalex.org/W2112551642","https://openalex.org/W2116027790","https://openalex.org/W2117190895","https://openalex.org/W2130101057","https://openalex.org/W2136466390","https://openalex.org/W2141219683","https://openalex.org/W2144231370","https://openalex.org/W2144363122","https://openalex.org/W2144914982","https://openalex.org/W2144975794","https://openalex.org/W2147489306","https://openalex.org/W2156622081","https://openalex.org/W2158714788","https://openalex.org/W2159830272","https://openalex.org/W2166265186","https://openalex.org/W2171527563","https://openalex.org/W3216020230","https://openalex.org/W4235874578","https://openalex.org/W4246395620"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"PlantGDB":[0,51,95],"(http://www.plantgdb.org/)":[1],"is":[2,54],"a":[3,75],"database":[4,18],"of":[5,49,62,77],"molecular":[6],"sequence":[7,42],"data":[8],"for":[9,59,108],"all":[10,66,102],"plant":[11],"species":[12,72,86,89],"with":[13,90],"significant":[14],"sequencing":[15,93],"efforts.":[16],"The":[17,47],"organizes":[19],"EST":[20,104],"sequences":[21],"into":[22],"contigs":[23],"that":[24,80,100],"represent":[25],"tentative":[26],"unique":[27],"genes.":[28],"Contigs":[29],"are":[30,44],"annotated":[31],"and,":[32],"whenever":[33],"possible,":[34],"linked":[35],"to":[36,55,65,70],"their":[37],"respective":[38],"genomic":[39],"DNA.":[40],"Genome":[41],"fragments":[43],"assembled":[45],"similarly.":[46],"goal":[48],"the":[50,57,116],"web":[52],"site":[53,118],"establish":[56],"basis":[58],"identifying":[60],"sets":[61],"genes":[63],"common":[64],"plants":[67],"or":[68],"specific":[69],"particular":[71],"by":[73],"integrating":[74],"number":[76],"bioinformatics":[78],"tools":[79],"facilitate":[81],"gene":[82,110],"prediction":[83],"and":[84,105],"cross-":[85],"comparisons.":[87],"For":[88],"large-scale":[91],"genome":[92,97],"efforts,":[94],"provides":[96],"browsing":[98],"capabilities":[99],"integrate":[101],"available":[103],"cDNA":[106],"evidence":[107],"current":[109],"models":[111],"(for":[112],"Arabidopsis":[113],"thaliana,":[114],"see":[115],"AtGDB":[117],"at":[119],"http://www.plantgdb.org/AtGDB/).":[120]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}