{"id":"https://openalex.org/W4229899734","doi":"https://doi.org/10.1093/nar/gkh038","title":"Ensembl 2004","display_name":"Ensembl 2004","publication_year":2003,"publication_date":"2003-12-17","ids":{"openalex":"https://openalex.org/W4229899734","doi":"https://doi.org/10.1093/nar/gkh038","pmid":"https://pubmed.ncbi.nlm.nih.gov/14681459"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh038","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D468/7621376/gkh038.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D468/7621376/gkh038.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061379058","display_name":"Ewan Birney","orcid":"https://orcid.org/0000-0001-8314-8497"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"E. Birney","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5061379058"],"corresponding_institution_ids":["https://openalex.org/I2802476451"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":47.1017,"has_fulltext":false,"cited_by_count":143,"citation_normalized_percentile":{"value":0.99902405,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"32","issue":"90001","first_page":"468D","last_page":"470"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.9931553602218628},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.746828556060791},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6198097467422485},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.593522310256958},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5822054743766785},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.500971794128418},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4831216037273407},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.46649810671806335},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.405961275100708},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.35579371452331543},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3251364529132843},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32220953702926636},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.31686100363731384},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20726639032363892},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1776377558708191},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07903456687927246},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06751027703285217}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.9931553602218628},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.746828556060791},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6198097467422485},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.593522310256958},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5822054743766785},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.500971794128418},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4831216037273407},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.46649810671806335},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.405961275100708},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.35579371452331543},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3251364529132843},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32220953702926636},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.31686100363731384},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20726639032363892},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1776377558708191},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07903456687927246},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06751027703285217}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkh038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh038","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D468/7621376/gkh038.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:14681459","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14681459","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/03843c68-a3d5-4050-9557-c9d6becb5fe2","is_oa":false,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/03843c68-a3d5-4050-9557-c9d6becb5fe2","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Birney, E, Andrews, D, Bevan, P, Caccamo, M, Cameron, G, Chen, Y, Clarke, L, Coates, G, Cox, T, Cuff, J, Curwen, V, Cutts, T, Down, T, Durbin, R, Eyras, E, Fernandez-Suarez, X M, Gane, P, Gibbins, B, Gilbert, J, Hammond, M, Hotz, H, Iyer, V, Kahari, A, Jekosch, K, Kasprzyk, A, Keefe, D, Keenan, S, Lehvaslaiho, H, McVicker, G, Melsopp, C, Meidl, P, Mongin, E, Pettett, R, Potter, S, Proctor, G, Rae, M, Searle, S, Slater, G, Smedley, D, Smith, J, Spooner, W, Stabenau, A, Stalker, J, Storey, R, Ureta-Vidal, A, Woodwark, C, Clamp, M & Hubbard, T 2004, 'Ensembl 2004', Nucleic Acids Research, vol. 32, no. Database issue, pp. D468-470. https://doi.org/10.1093/nar/gkh038","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:308772","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/308772","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh038","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D468/7621376/gkh038.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4229899734.pdf","grobid_xml":"https://content.openalex.org/works/W4229899734.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1988431525","https://openalex.org/W2112118427","https://openalex.org/W2117936709","https://openalex.org/W2122571913","https://openalex.org/W2148047088","https://openalex.org/W2151464048","https://openalex.org/W2158304452","https://openalex.org/W2164085656"],"related_works":["https://openalex.org/W3111061871","https://openalex.org/W2162782320","https://openalex.org/W2059565715","https://openalex.org/W2131581981","https://openalex.org/W4309908782","https://openalex.org/W4252139907","https://openalex.org/W4232413416","https://openalex.org/W2009940763","https://openalex.org/W2114034054","https://openalex.org/W1965079965"],"abstract_inverted_index":{"The":[0,74],"Ensembl":[1,52,110],"(http://www.ensembl.org/)":[2],"database":[3],"project":[4,59],"provides":[5],"a":[6,20,62,102],"bioinformatics":[7],"framework":[8],"to":[9,60,66,83,114],"organize":[10],"biology":[11],"around":[12,91],"the":[13,46,77,92],"sequences":[14,107],"of":[15,25,27,45,49,76,104],"large":[16,28,69],"genomes.":[17],"It":[18],"is":[19,53],"comprehensive":[21],"and":[22,71,86,88,97,111,126],"integrated":[23],"source":[24,56],"annotation":[26],"genome":[29,50,106],"sequences,":[30],"available":[31,108],"via":[32],"interactive":[33],"website,":[34],"web":[35],"services":[36],"or":[37],"flat":[38],"files.":[39],"As":[40],"well":[41],"as":[42],"being":[43],"one":[44],"leading":[47],"sources":[48],"annotation,":[51],"an":[54],"open":[55],"software":[57],"engineering":[58],"develop":[61],"portable":[63],"system":[64,78],"able":[65],"handle":[67],"very":[68],"genomes":[70,113,125],"associated":[72],"requirements.":[73],"facilities":[75],"range":[79],"from":[80,109],"sequence":[81],"analysis":[82],"data":[84],"storage":[85],"visualization":[87],"installations":[89],"exist":[90],"world":[93],"both":[94],"in":[95],"companies":[96],"at":[98],"academic":[99],"sites.":[100],"With":[101],"total":[103],"nine":[105],"more":[112],"follow,":[115],"recent":[116],"developments":[117],"have":[118],"focused":[119],"mainly":[120],"on":[121],"closer":[122],"integration":[123],"between":[124],"external":[127],"data.":[128]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2022-05-11T00:00:00"}
