{"id":"https://openalex.org/W2129786237","doi":"https://doi.org/10.1093/nar/gkh037","title":"PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries","display_name":"PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries","publication_year":2003,"publication_date":"2003-12-18","ids":{"openalex":"https://openalex.org/W2129786237","doi":"https://doi.org/10.1093/nar/gkh037","mag":"2129786237","pmid":"https://pubmed.ncbi.nlm.nih.gov/14681463"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkh037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh037","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D484/7621368/gkh037.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D484/7621368/gkh037.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079824996","display_name":"Hirohide Uenishi","orcid":"https://orcid.org/0000-0002-3899-9580"},"institutions":[{"id":"https://openalex.org/I3018761593","display_name":"Institute of Agrobiological Sciences","ror":"https://ror.org/01786mp71","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1323638106","https://openalex.org/I3018761593"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"H. Uenishi","raw_affiliation_strings":["Genome Research Department, National Institute of Agrobiological Sciences, 2 Ikenodai, Tsukuba, Ibaraki 305-8602, Japan. huenishi@affrc.go.jp","Genome Research Department, National Institute of Agrobiological Sciences, 2 Ikenodai, Tsukuba, Ibaraki 305-8602, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genome Research Department, National Institute of Agrobiological Sciences, 2 Ikenodai, Tsukuba, Ibaraki 305-8602, Japan. huenishi@affrc.go.jp","institution_ids":["https://openalex.org/I3018761593"]},{"raw_affiliation_string":"Genome Research Department, National Institute of Agrobiological Sciences, 2 Ikenodai, Tsukuba, Ibaraki 305-8602, Japan","institution_ids":["https://openalex.org/I3018761593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5079824996"],"corresponding_institution_ids":["https://openalex.org/I3018761593"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":4.9263,"has_fulltext":false,"cited_by_count":89,"citation_normalized_percentile":{"value":0.95532574,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"32","issue":"90001","first_page":"484D","last_page":"488"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12929","display_name":"Animal Genetics and Reproduction","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8699773550033569},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.7883328199386597},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.739185094833374},{"id":"https://openalex.org/keywords/complementary-dna","display_name":"Complementary DNA","score":0.7276899814605713},{"id":"https://openalex.org/keywords/cdna-library","display_name":"cDNA library","score":0.6433181166648865},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4369910955429077},{"id":"https://openalex.org/keywords/unigene","display_name":"UniGene","score":0.4204220473766327},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40207040309906006},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3518846035003662},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.3327104449272156},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21628087759017944},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15596628189086914},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08504292368888855}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8699773550033569},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.7883328199386597},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.739185094833374},{"id":"https://openalex.org/C187882448","wikidata":"https://www.wikidata.org/wiki/Q283478","display_name":"Complementary DNA","level":3,"score":0.7276899814605713},{"id":"https://openalex.org/C189482833","wikidata":"https://www.wikidata.org/wiki/Q869146","display_name":"cDNA library","level":4,"score":0.6433181166648865},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4369910955429077},{"id":"https://openalex.org/C2780330800","wikidata":"https://www.wikidata.org/wiki/Q7884647","display_name":"UniGene","level":5,"score":0.4204220473766327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40207040309906006},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3518846035003662},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.3327104449272156},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21628087759017944},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15596628189086914},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08504292368888855}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013552","descriptor_name":"Swine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkh037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh037","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D484/7621368/gkh037.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:14681463","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14681463","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:161211","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC308771","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:308771","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/308771","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkh037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkh037","pdf_url":"https://academic.oup.com/nar/article-pdf/32/suppl_1/D484/7621368/gkh037.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320315566","display_name":"Japan Racing Association","ror":"https://ror.org/00v8w0b34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1969345130","https://openalex.org/W1971307410","https://openalex.org/W2029633625","https://openalex.org/W2032785109","https://openalex.org/W2044642053","https://openalex.org/W2045817678","https://openalex.org/W2060654419","https://openalex.org/W2069461684","https://openalex.org/W2072513228","https://openalex.org/W2084847549","https://openalex.org/W2097708427","https://openalex.org/W2101972919","https://openalex.org/W2114049512","https://openalex.org/W2119923823","https://openalex.org/W2121016876","https://openalex.org/W2125439994","https://openalex.org/W2137270049","https://openalex.org/W2144975794","https://openalex.org/W2158714788","https://openalex.org/W2166265186","https://openalex.org/W2334397963"],"related_works":["https://openalex.org/W1984970742","https://openalex.org/W2032180350","https://openalex.org/W2595476180","https://openalex.org/W2383213425","https://openalex.org/W2163118548","https://openalex.org/W1969876234","https://openalex.org/W2345744709","https://openalex.org/W1959154305","https://openalex.org/W2113944710","https://openalex.org/W2254526121"],"abstract_inverted_index":{"We":[0],"generated":[1],"the":[2,85,100],"PEDE":[3,54],"(Pig":[4],"EST":[5,27,86],"Data":[6],"Explorer;":[7],"http://pede.dna.affrc.go.jp/)":[8],"database":[9,103],"using":[10],"sequences":[11,47,87],"assembled":[12,44],"from":[13,17],"porcine":[14],"5'":[15],"ESTs":[16],"oligo-capped":[18],"full-length":[19],"cDNA":[20,75],"libraries.":[21],"Thus":[22],"far":[23],"we":[24],"have":[25],"performed":[26],"analysis":[28],"of":[29,62,77,84,108],"various":[30],"organs":[31],"(thymus,":[32],"spleen,":[33],"uterus,":[34],"lung,":[35],"liver,":[36],"ovary":[37],"and":[38,43,51,65,74,93,96,111],"peripheral":[39],"blood":[40],"mononuclear":[41],"cells)":[42],"68,076":[45],"high-quality":[46],"into":[48],"5546":[49],"contigs":[50],"28,461":[52],"singlets.":[53],"provides":[55],"a":[56],"search":[57],"interface":[58],"for":[59,125],"getting":[60],"results":[61],"homology":[63],"searches":[64],"enables":[66],"users":[67],"to":[68,117],"obtain":[69],"information":[70,113],"on":[71],"sequence":[72],"data":[73],"clones":[76],"interest.":[78],"Single-nucleotide":[79],"polymorphisms":[80],"detected":[81],"through":[82],"comparison":[83],"are":[88,97],"classified":[89],"by":[90],"origin":[91],"(western":[92],"oriental":[94],"breeds)":[95],"searchable":[98],"in":[99,120],"database.":[101],"This":[102],"system":[104],"can":[105,115],"accelerate":[106],"analyses":[107],"livestock":[109],"traits":[110],"yields":[112],"that":[114],"lead":[116],"new":[118],"applications":[119],"pigs":[121],"as":[122],"model":[123],"systems":[124],"medical":[126],"research.":[127]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
