{"id":"https://openalex.org/W2137640371","doi":"https://doi.org/10.1093/nar/gkg614","title":"Pfold: RNA secondary structure prediction using stochastic context-free grammars","display_name":"Pfold: RNA secondary structure prediction using stochastic context-free grammars","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2137640371","doi":"https://doi.org/10.1093/nar/gkg614","mag":"2137640371","pmid":"https://pubmed.ncbi.nlm.nih.gov/12824339"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg614","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg614","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3423/19686977/gkg614.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/13/3423/19686977/gkg614.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041681575","display_name":"Bjarne Knudsen","orcid":null},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Bjarne Knudsen","raw_affiliation_strings":["BiRC (Bioinformatics Research Center), University of Aarhus, H\u00f8egh Guldbergsgade 10, Building 090, 8000 Arhus C, Denmark. bk@birc.dk","BiRC (Bioinformatics Research Center), University of Aarhus, H\u00f8egh Guldbergsgade 10, Building 090, 8000 Arhus C, Denmark"],"affiliations":[{"raw_affiliation_string":"BiRC (Bioinformatics Research Center), University of Aarhus, H\u00f8egh Guldbergsgade 10, Building 090, 8000 Arhus C, Denmark. bk@birc.dk","institution_ids":["https://openalex.org/I204337017"]},{"raw_affiliation_string":"BiRC (Bioinformatics Research Center), University of Aarhus, H\u00f8egh Guldbergsgade 10, Building 090, 8000 Arhus C, Denmark","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079496228","display_name":"Jotun Hein","orcid":"https://orcid.org/0000-0002-8100-0824"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jotun Hein","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041681575"],"corresponding_institution_ids":["https://openalex.org/I204337017"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":5.4905,"has_fulltext":false,"cited_by_count":459,"citation_normalized_percentile":{"value":0.96807815,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"13","first_page":"3423","last_page":"3428"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.7927678823471069},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.7262402176856995},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7151349782943726},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6826739311218262},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5629554390907288},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5495936274528503},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5450502038002014},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5199404954910278},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5033814311027527},{"id":"https://openalex.org/keywords/context-free-grammar","display_name":"Context-free grammar","score":0.4853857755661011},{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.4611636996269226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3704228699207306},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29642966389656067},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24619534611701965},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18105214834213257}],"concepts":[{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.7927678823471069},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.7262402176856995},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7151349782943726},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6826739311218262},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5629554390907288},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5495936274528503},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5450502038002014},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5199404954910278},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5033814311027527},{"id":"https://openalex.org/C97212296","wikidata":"https://www.wikidata.org/wiki/Q338047","display_name":"Context-free grammar","level":3,"score":0.4853857755661011},{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.4611636996269226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3704228699207306},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29642966389656067},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24619534611701965},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18105214834213257},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkg614","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg614","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3423/19686977/gkg614.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12824339","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12824339","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.186.5030","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.186.5030","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ubc.ca/%7Eirmtraud/cs_545/web_material/knudsen_2003.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:158869","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC169020","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:8faf99f4-73d9-4c70-8879-cd41f8e1398a","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:8faf99f4-73d9-4c70-8879-cd41f8e1398a","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:169020","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:169020","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/169020","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg614","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg614","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3423/19686977/gkg614.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137640371.pdf","grobid_xml":"https://content.openalex.org/works/W2137640371.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1525734744","https://openalex.org/W1526127001","https://openalex.org/W1579352620","https://openalex.org/W1822105579","https://openalex.org/W1968256798","https://openalex.org/W1978470410","https://openalex.org/W1984675364","https://openalex.org/W2009265617","https://openalex.org/W2009570821","https://openalex.org/W2009736453","https://openalex.org/W2009818318","https://openalex.org/W2020496613","https://openalex.org/W2025763720","https://openalex.org/W2044595289","https://openalex.org/W2045895660","https://openalex.org/W2054931730","https://openalex.org/W2092979861","https://openalex.org/W2097706568","https://openalex.org/W2099359200","https://openalex.org/W2102225325","https://openalex.org/W2102424972","https://openalex.org/W2106882534","https://openalex.org/W2107010419","https://openalex.org/W2109119231","https://openalex.org/W2116520841","https://openalex.org/W2134453550","https://openalex.org/W2140651796","https://openalex.org/W2166412654","https://openalex.org/W2167673850","https://openalex.org/W2169239541","https://openalex.org/W4234879553","https://openalex.org/W4234887284","https://openalex.org/W4245270879","https://openalex.org/W4245668478","https://openalex.org/W4245826738","https://openalex.org/W4251866352"],"related_works":["https://openalex.org/W4386361828","https://openalex.org/W2076804805","https://openalex.org/W2038598202","https://openalex.org/W2917779798","https://openalex.org/W2332182791","https://openalex.org/W4381955104","https://openalex.org/W2560251639","https://openalex.org/W2520941435","https://openalex.org/W2466822258","https://openalex.org/W2145832146"],"abstract_inverted_index":{"RNA":[0,24,51,76],"secondary":[1,25,55,77],"structures":[2],"are":[3],"important":[4],"in":[5,40,61],"many":[6],"biological":[7],"processes":[8],"and":[9,101],"efficient":[10],"structure":[11,26,78],"prediction":[12,27],"can":[13,86,108],"give":[14,65],"vital":[15],"directions":[16],"for":[17,23],"experimental":[18],"investigations.":[19],"Many":[20],"available":[21],"programs":[22],"only":[28],"use":[29],"a":[30,34,71,92,102,112],"single":[31],"sequence":[32],"at":[33,115],"time.":[35],"This":[36,68],"may":[37],"be":[38,59,87,109],"sufficient":[39],"some":[41],"applications,":[42],"but":[43],"often":[44],"it":[45],"is":[46,80],"possible":[47],"to":[48,64],"obtain":[49],"related":[50,84],"sequences":[52,85],"with":[53],"conserved":[54],"structure.":[56],"These":[57],"should":[58],"included":[60],"structural":[62],"analyses":[63],"improved":[66],"results.":[67],"work":[69],"presents":[70],"practical":[72],"way":[73],"of":[74,105],"predicting":[75],"that":[79],"especially":[81],"useful":[82],"when":[83],"obtained.":[88],"The":[89],"method":[90],"improves":[91],"previous":[93],"algorithm":[94],"based":[95],"on":[96,111],"an":[97],"explicit":[98],"evolutionary":[99],"model":[100,104],"probabilistic":[103],"structures.":[106],"Predictions":[107],"done":[110],"web":[113],"server":[114],"http://www.daimi.au.dk/~compbio/pfold.":[116]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":38},{"year":2012,"cited_by_count":33}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}