{"id":"https://openalex.org/W2098429244","doi":"https://doi.org/10.1093/nar/gkg514","title":"LOC3D: annotate sub-cellular localization for protein structures","display_name":"LOC3D: annotate sub-cellular localization for protein structures","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2098429244","doi":"https://doi.org/10.1093/nar/gkg514","mag":"2098429244","pmid":"https://pubmed.ncbi.nlm.nih.gov/12824321"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg514","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg514","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3337/9487125/gkg514.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/13/3337/9487125/gkg514.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067912188","display_name":"Rajesh Nair","orcid":"https://orcid.org/0000-0001-7911-4972"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. Nair","raw_affiliation_strings":["CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA. nair@cubic.bioc.columbia.edu","CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street, BB217, New York, NY 10032, USA"],"affiliations":[{"raw_affiliation_string":"CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA. nair@cubic.bioc.columbia.edu","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street, BB217, New York, NY 10032, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5067912188"],"corresponding_institution_ids":["https://openalex.org/I78577930"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.6014,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.82520871,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"31","issue":"13","first_page":"3337","last_page":"3340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7253426313400269},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.7183588743209839},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6975694894790649},{"id":"https://openalex.org/keywords/nuclear-localization-sequence","display_name":"Nuclear localization sequence","score":0.6044014096260071},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5927913784980774},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5692344903945923},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.5097269415855408},{"id":"https://openalex.org/keywords/structural-genomics","display_name":"Structural genomics","score":0.5075951814651489},{"id":"https://openalex.org/keywords/protein-methods","display_name":"Protein methods","score":0.47305718064308167},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.47175365686416626},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4680319130420685},{"id":"https://openalex.org/keywords/sequence-homology","display_name":"Sequence homology","score":0.4537140130996704},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.4418882131576538},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4405035972595215},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.42750316858291626},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.41452106833457947},{"id":"https://openalex.org/keywords/nls","display_name":"NLS","score":0.41116422414779663},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35781359672546387},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3253365457057953},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3121844530105591},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.31082165241241455},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.30276501178741455},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26751261949539185},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2615010738372803},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14900782704353333},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09698721766471863}],"concepts":[{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7253426313400269},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.7183588743209839},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6975694894790649},{"id":"https://openalex.org/C49805395","wikidata":"https://www.wikidata.org/wiki/Q910966","display_name":"Nuclear localization sequence","level":3,"score":0.6044014096260071},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5927913784980774},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5692344903945923},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.5097269415855408},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.5075951814651489},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.47305718064308167},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.47175365686416626},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4680319130420685},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.4537140130996704},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.4418882131576538},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4405035972595215},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.42750316858291626},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.41452106833457947},{"id":"https://openalex.org/C186435350","wikidata":"https://www.wikidata.org/wiki/Q1050365","display_name":"NLS","level":4,"score":0.41116422414779663},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35781359672546387},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3253365457057953},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3121844530105591},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.31082165241241455},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.30276501178741455},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26751261949539185},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2615010738372803},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14900782704353333},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09698721766471863},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019913","descriptor_name":"Nuclear Localization Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019913","descriptor_name":"Nuclear Localization Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019913","descriptor_name":"Nuclear Localization Signals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkg514","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg514","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3337/9487125/gkg514.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12824321","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12824321","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:158797","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC168921","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:168921","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:168921","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/168921","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg514","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg514","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3337/9487125/gkg514.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6597656779","display_name":"Ab Initio Prediction of Protein Localization","funder_award_id":"0131168","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098429244.pdf","grobid_xml":"https://content.openalex.org/works/W2098429244.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1491250132","https://openalex.org/W1521903177","https://openalex.org/W1610836425","https://openalex.org/W2003144438","https://openalex.org/W2024022608","https://openalex.org/W2055043387","https://openalex.org/W2073064803","https://openalex.org/W2094560491","https://openalex.org/W2096358531","https://openalex.org/W2099254366","https://openalex.org/W2101220662","https://openalex.org/W2101783948","https://openalex.org/W2101968184","https://openalex.org/W2117019496","https://openalex.org/W2121869529","https://openalex.org/W2129448726","https://openalex.org/W2130479394","https://openalex.org/W2130925474","https://openalex.org/W2136766277","https://openalex.org/W2137601093","https://openalex.org/W2147285856","https://openalex.org/W2150934173","https://openalex.org/W2158714788","https://openalex.org/W2165795960","https://openalex.org/W2166708118","https://openalex.org/W2168514491","https://openalex.org/W2169043568","https://openalex.org/W2613359208","https://openalex.org/W2916193864","https://openalex.org/W4213149192","https://openalex.org/W4236236547","https://openalex.org/W4244324093"],"related_works":["https://openalex.org/W2147095787","https://openalex.org/W2116774744","https://openalex.org/W2170471837","https://openalex.org/W2166233246","https://openalex.org/W2121688928","https://openalex.org/W2145118195","https://openalex.org/W2086648377","https://openalex.org/W1595347157","https://openalex.org/W2153191110","https://openalex.org/W2098429244"],"abstract_inverted_index":{"LOC3D":[0,91],"(http://cubic.bioc.columbia.edu/db/LOC3d/)":[1],"is":[2,25,78,126],"both":[3],"a":[4,8,66,123],"weekly-updated":[5],"database":[6,92],"and":[7,59,71],"web":[9,109],"server":[10,110],"for":[11,16,96,118,120],"predictions":[12,95],"of":[13,19,34,56,68,135],"sub-cellular":[14,116],"localization":[15,39,44,51,85,117],"eukaryotic":[17,98],"proteins":[18,36,119],"known":[20],"three-dimensional":[21],"(3D)":[22],"structure.":[23],"Localization":[24],"predicted":[26,124],"using":[27],"four":[28],"different":[29],"methods:":[30],"(i)":[31],"PredictNLS,":[32],"prediction":[33,64,77],"nuclear":[35,38],"through":[37,45,52,65],"signals;":[40],"(ii)":[41],"LOChom,":[42],"inferring":[43,50],"sequence":[46],"homology;":[47],"(iii)":[48],"LOCkey,":[49],"automatic":[53],"text":[54],"analysis":[55],"SWISS-PROT":[57],"keywords;":[58],"(iv)":[60],"LOC3Dini,":[61],"ab":[62],"initio":[63],"system":[67],"neural":[69],"networks":[70],"vector":[72],"support":[73],"machines.":[74],"The":[75,90,108],"final":[76],"based":[79],"on":[80],"the":[81,87,103,133],"method":[82],"that":[83],"predicts":[84],"with":[86],"highest":[88],"confidence.":[89],"currently":[93],"contains":[94],">8700":[97],"protein":[99],"chains":[100],"taken":[101],"from":[102,128],"Protein":[104],"Data":[105],"Bank":[106],"(PDB).":[107],"can":[111],"be":[112],"used":[113],"to":[114,138],"predict":[115],"which":[121],"only":[122],"structure":[125],"available":[127],"threading":[129],"servers.":[130],"This":[131],"makes":[132],"resource":[134],"particular":[136],"interest":[137],"structural":[139],"genomics":[140],"initiatives.":[141]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}