{"id":"https://openalex.org/W2139942857","doi":"https://doi.org/10.1093/nar/gkg512","title":"CASTp: Computed Atlas of Surface Topography of proteins","display_name":"CASTp: Computed Atlas of Surface Topography of proteins","publication_year":2003,"publication_date":"2003-06-24","ids":{"openalex":"https://openalex.org/W2139942857","doi":"https://doi.org/10.1093/nar/gkg512","mag":"2139942857","pmid":"https://pubmed.ncbi.nlm.nih.gov/12824325"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg512","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg512","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3352/9487117/gkg512.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/13/3352/9487117/gkg512.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112470406","display_name":"T.A. Binkowski","orcid":null},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. A. Binkowski","raw_affiliation_strings":["Department of Bioengineering, MC-063, University of Illinois at Chicago, 851 S. Morgan Street, Chicago, IL 60607, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, MC-063, University of Illinois at Chicago, 851 S. Morgan Street, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5112470406"],"corresponding_institution_ids":["https://openalex.org/I39422238"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":12.9056,"has_fulltext":true,"cited_by_count":1693,"citation_normalized_percentile":{"value":0.99328742,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"13","first_page":"3352","last_page":"3355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.7247974276542664},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6599370241165161},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5008721351623535},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.49460503458976746},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.4624064266681671},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4519413113594055},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.44791069626808167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33683258295059204},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.3310994505882263},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15727835893630981},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.13174250721931458},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09543019533157349}],"concepts":[{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.7247974276542664},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6599370241165161},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5008721351623535},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.49460503458976746},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.4624064266681671},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4519413113594055},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.44791069626808167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33683258295059204},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.3310994505882263},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15727835893630981},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.13174250721931458},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09543019533157349},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkg512","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg512","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3352/9487117/gkg512.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12824325","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12824325","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmid:29860391","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29860391","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6031066","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6031066","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.159.7990","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.159.7990","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://gila-fw.bioengr.uic.edu/lab/papers/2003/Binkowski-Castp03.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.336.4111","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.336.4111","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/31/13/3352.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:158796","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC168919","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:168919","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:168919","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/168919","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg512","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg512","pdf_url":"https://academic.oup.com/nar/article-pdf/31/13/3352/9487117/gkg512.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139942857.pdf","grobid_xml":"https://content.openalex.org/works/W2139942857.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W296047291","https://openalex.org/W1543838209","https://openalex.org/W1585634379","https://openalex.org/W1972159725","https://openalex.org/W1975023205","https://openalex.org/W1991981966","https://openalex.org/W2004360551","https://openalex.org/W2006219803","https://openalex.org/W2008708467","https://openalex.org/W2014219943","https://openalex.org/W2026258231","https://openalex.org/W2028812499","https://openalex.org/W2029432400","https://openalex.org/W2030432262","https://openalex.org/W2042581627","https://openalex.org/W2044472606","https://openalex.org/W2057946823","https://openalex.org/W2065064126","https://openalex.org/W2078290150","https://openalex.org/W2082941768","https://openalex.org/W2105902442","https://openalex.org/W2108508060","https://openalex.org/W2124306294","https://openalex.org/W2132629607","https://openalex.org/W2139942857","https://openalex.org/W2154139219"],"related_works":["https://openalex.org/W2944823289","https://openalex.org/W2003209439","https://openalex.org/W2314146950","https://openalex.org/W4321854979","https://openalex.org/W2373521488","https://openalex.org/W3037018281","https://openalex.org/W2358319515","https://openalex.org/W2972592048","https://openalex.org/W2324878645","https://openalex.org/W2803101231"],"abstract_inverted_index":{"Computed":[0],"Atlas":[1],"of":[2,5,23,38,47,79],"Surface":[3],"Topography":[4],"proteins":[6],"(CASTp)":[7],"provides":[8],"an":[9],"online":[10],"resource":[11],"for":[12,95],"locating,":[13],"delineating":[14],"and":[15,32,45,58,76,103],"measuring":[16],"concave":[17],"surface":[18,54,61,74],"regions":[19,78],"on":[20,29],"three-dimensional":[21],"structures":[22],"proteins.":[24,39,80],"These":[25],"include":[26],"pockets":[27],"located":[28],"protein":[30],"surfaces":[31],"voids":[33],"buried":[34],"in":[35],"the":[36,43],"interior":[37],"The":[40],"measurement":[41],"includes":[42,82],"area":[44],"volume":[46],"pocket":[48],"or":[49],"void":[50],"by":[51,59],"solvent":[52],"accessible":[53],"model":[55,62],"(Richards'":[56],"surface)":[57],"molecular":[60],"(Connolly's":[63],"surface),":[64],"all":[65],"calculated":[66],"analytically.":[67],"CASTp":[68,81,99],"can":[69,104],"be":[70,105],"used":[71],"to":[72],"study":[73],"features":[75],"functional":[77],"a":[83],"graphical":[84],"user":[85,96],"interface,":[86],"flexible":[87],"interactive":[88],"visualization,":[89],"as":[90,92],"well":[91],"on-the-fly":[93],"calculation":[94],"uploaded":[97],"structures.":[98],"is":[100],"updated":[101],"daily":[102],"accessed":[106],"at":[107],"http://cast.engr.uic.edu.":[108]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":104},{"year":2024,"cited_by_count":171},{"year":2023,"cited_by_count":188},{"year":2022,"cited_by_count":207},{"year":2021,"cited_by_count":224},{"year":2020,"cited_by_count":182},{"year":2019,"cited_by_count":114},{"year":2018,"cited_by_count":39},{"year":2017,"cited_by_count":32},{"year":2016,"cited_by_count":32},{"year":2015,"cited_by_count":30},{"year":2014,"cited_by_count":50},{"year":2013,"cited_by_count":32},{"year":2012,"cited_by_count":29}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2016-06-24T00:00:00"}
