{"id":"https://openalex.org/W2125347557","doi":"https://doi.org/10.1093/nar/gkg148","title":"The ERGOTM genome analysis and discovery system","display_name":"The ERGOTM genome analysis and discovery system","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2125347557","doi":"https://doi.org/10.1093/nar/gkg148","mag":"2125347557","pmid":"https://pubmed.ncbi.nlm.nih.gov/12519973"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg148","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg148","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/164/7128501/gkg148.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/164/7128501/gkg148.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085138988","display_name":"Ross Overbeek","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163099","display_name":"Igenbio (United States)","ror":"https://ror.org/057t4ts30","country_code":"US","type":"company","lineage":["https://openalex.org/I4210163099"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. Overbeek","raw_affiliation_strings":["Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, IL 60612, USA. ross@integratedgenomics.com","Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, IL 60612, USA"],"affiliations":[{"raw_affiliation_string":"Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, IL 60612, USA. ross@integratedgenomics.com","institution_ids":["https://openalex.org/I4210163099"]},{"raw_affiliation_string":"Integrated Genomics Inc., 2201 West Campbell Park Drive, Chicago, IL 60612, USA","institution_ids":["https://openalex.org/I4210163099"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5085138988"],"corresponding_institution_ids":["https://openalex.org/I4210163099"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.8375,"has_fulltext":true,"cited_by_count":240,"citation_normalized_percentile":{"value":0.98906149,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"31","issue":"1","first_page":"164","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8550474643707275},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7581816911697388},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6182601451873779},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.615339994430542},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.49788951873779297},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4664648771286011},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.4566684067249298},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.4273110628128052},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4213990569114685},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.401218056678772},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10847306251525879}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8550474643707275},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7581816911697388},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6182601451873779},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.615339994430542},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.49788951873779297},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4664648771286011},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4566684067249298},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.4273110628128052},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4213990569114685},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.401218056678772},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10847306251525879},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkg148","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg148","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/164/7128501/gkg148.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12519973","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12519973","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:158750","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC165577","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165577","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165577","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165577","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg148","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg148","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/164/7128501/gkg148.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125347557.pdf","grobid_xml":"https://content.openalex.org/works/W2125347557.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1852198444","https://openalex.org/W1975308721","https://openalex.org/W1981021538","https://openalex.org/W1994025789","https://openalex.org/W1995117714","https://openalex.org/W1996423252","https://openalex.org/W2002526785","https://openalex.org/W2003144438","https://openalex.org/W2044479349","https://openalex.org/W2049483248","https://openalex.org/W2056503383","https://openalex.org/W2067746203","https://openalex.org/W2079580023","https://openalex.org/W2106882534","https://openalex.org/W2112012991","https://openalex.org/W2117019496","https://openalex.org/W2141885858","https://openalex.org/W2143173841","https://openalex.org/W2143517204","https://openalex.org/W2146312020","https://openalex.org/W2148474327","https://openalex.org/W2158714788","https://openalex.org/W2163867965","https://openalex.org/W2169929748","https://openalex.org/W2170825071","https://openalex.org/W4210531204","https://openalex.org/W4213149192"],"related_works":["https://openalex.org/W2414506155","https://openalex.org/W2752117239","https://openalex.org/W1493660383","https://openalex.org/W2759519215","https://openalex.org/W2170130581","https://openalex.org/W2941201441","https://openalex.org/W4318240630","https://openalex.org/W2353729507","https://openalex.org/W2560359598","https://openalex.org/W3023271652"],"abstract_inverted_index":{"The":[0,74,125],"ERGO":[1,42,110],"(http://ergo.integratedgenomics.com/ERGO/)":[2],"genome":[3],"analysis":[4,28,45],"and":[5,21,31,66],"discovery":[6],"suite":[7],"is":[8,80,111,117],"an":[9,83],"integration":[10,91],"of":[11,29,55,69,76,87,92,98,105,128,137,142,145],"biological":[12],"data":[13],"from":[14,134],"genomics,":[15],"biochemistry,":[16],"high-throughput":[17],"expression":[18,57],"profiling,":[19,58],"genetics":[20],"peer-reviewed":[22],"journals":[23],"to":[24,81,109],"achieve":[25],"a":[26,95],"comprehensive":[27],"genes":[30,51],"genomes.":[32],"Far":[33],"beyond":[34],"any":[35],"conventional":[36],"systems":[37],"that":[38],"facilitate":[39],"functional":[40],"assignments,":[41],"combines":[43],"pattern-based":[44],"with":[46,94],"comparative":[47],"genomics":[48],"by":[49,121],"visualizing":[50],"within":[52],"the":[53,88,122,129],"context":[54],"regulation,":[56],"phylogenetic":[59],"clusters,":[60],"fusion":[61],"events,":[62],"networked":[63],"cellular":[64,100],"pathways":[65,101],"chromosomal":[67],"neighborhoods":[68],"other":[70],"functionally":[71],"related":[72],"genes.":[73],"result":[75],"this":[77],"multifaceted":[78],"approach":[79],"provide":[82],"extensively":[84],"curated":[85],"database":[86],"largest":[89],"available":[90,148],"genomes,":[93],"vast":[96],"collection":[97],"reconstructed":[99],"spanning":[102],"all":[103,135],"domains":[104,136],"life.":[106],"Although":[107],"access":[108],"provided":[112],"only":[113],"under":[114],"subscription,":[115],"it":[116],"already":[118],"widely":[119],"used":[120],"academic":[123],"community.":[124],"current":[126],"version":[127],"system":[130],"integrates":[131],"500":[132],"genomes":[133],"life":[138],"in":[139],"various":[140],"levels":[141],"completion,":[143],"403":[144],"which":[146],"are":[147],"for":[149],"subscription.":[150]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":11}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
