{"id":"https://openalex.org/W2168783124","doi":"https://doi.org/10.1093/nar/gkg129","title":"The UCSC Genome Browser Database","display_name":"The UCSC Genome Browser Database","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2168783124","doi":"https://doi.org/10.1093/nar/gkg129","mag":"2168783124","pmid":"https://pubmed.ncbi.nlm.nih.gov/12519945"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg129","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/51/7128464/gkg129.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/51/7128464/gkg129.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076917634","display_name":"Donna Karolchik","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Karolchik","raw_affiliation_strings":["Genome Bioinformatics Group, The University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA. donnak@soe.ucsc.edu","Genome Bioinformatics Group, The University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA"],"affiliations":[{"raw_affiliation_string":"Genome Bioinformatics Group, The University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA. donnak@soe.ucsc.edu","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Genome Bioinformatics Group, The University of California Santa Cruz (UCSC), School of Engineering, 1156 High Street, Santa Cruz, CA 95064-1077, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5076917634"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":49.1853,"has_fulltext":false,"cited_by_count":1931,"citation_normalized_percentile":{"value":0.99958688,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"1","first_page":"51","last_page":"54"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.9711562395095825},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6627593636512756},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5429264903068542},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5253341197967529},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48292824625968933},{"id":"https://openalex.org/keywords/web-browser","display_name":"Web browser","score":0.45519885420799255},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4237228035926819},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.42148229479789734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4174090027809143},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3869806230068207},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3579597473144531},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18541845679283142},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1298522651195526},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09860154986381531}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9711562395095825},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6627593636512756},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5429264903068542},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5253341197967529},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48292824625968933},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.45519885420799255},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4237228035926819},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.42148229479789734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4174090027809143},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3869806230068207},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3579597473144531},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18541845679283142},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1298522651195526},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09860154986381531},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkg129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg129","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/51/7128464/gkg129.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12519945","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12519945","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:165576","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165576","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165576","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg129","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/51/7128464/gkg129.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309018","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168783124.pdf","grobid_xml":"https://content.openalex.org/works/W2168783124.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W189143987","https://openalex.org/W1511730061","https://openalex.org/W1786509598","https://openalex.org/W1978283952","https://openalex.org/W1984869292","https://openalex.org/W1985471440","https://openalex.org/W1993180856","https://openalex.org/W2072393958","https://openalex.org/W2096525273","https://openalex.org/W2099275700","https://openalex.org/W2099373309","https://openalex.org/W2107903949","https://openalex.org/W2108871359","https://openalex.org/W2112132489","https://openalex.org/W2112814753","https://openalex.org/W2115829389","https://openalex.org/W2116753165","https://openalex.org/W2119412782","https://openalex.org/W2122732537","https://openalex.org/W2128016314","https://openalex.org/W2130479394","https://openalex.org/W2131581981","https://openalex.org/W2132629607","https://openalex.org/W2136145671","https://openalex.org/W2142204199","https://openalex.org/W2149429041","https://openalex.org/W2150118470","https://openalex.org/W2158304452","https://openalex.org/W2165419403","https://openalex.org/W2166187656","https://openalex.org/W2168909179"],"related_works":["https://openalex.org/W2161951664","https://openalex.org/W3174992442","https://openalex.org/W4298080220","https://openalex.org/W2949621373","https://openalex.org/W2590969672","https://openalex.org/W4302610923","https://openalex.org/W1759033142","https://openalex.org/W4310490448","https://openalex.org/W2105114815","https://openalex.org/W2143797649"],"abstract_inverted_index":{"The":[0,28,62,102],"University":[1],"of":[2,25,48,56,76],"California":[3],"Santa":[4],"Cruz":[5],"(UCSC)":[6],"Genome":[7,41,103,119],"Browser":[8,104],"Database":[9],"is":[10,30],"an":[11],"up":[12],"to":[13,32,127],"date":[14],"source":[15],"for":[16,51,64],"genome":[17,67],"sequence":[18],"data":[19,58,84,110],"integrated":[20],"with":[21,37,79],"a":[22,43,65,74,92],"large":[23],"collection":[24],"related":[26,130],"annotations.":[27],"database":[29,50],"optimized":[31],"support":[33],"fast":[34],"interactive":[35],"performance":[36],"the":[38,49,57,71,80,117],"web-based":[39],"UCSC":[40,118],"Browser,":[42],"tool":[44],"built":[45],"on":[46,116],"top":[47],"rapid":[52],"visualization":[53],"and":[54,85,108,129],"querying":[55],"at":[59],"many":[60],"levels.":[61],"annotations":[63,86],"given":[66],"are":[68],"displayed":[69],"in":[70,91],"browser":[72],"as":[73,98],"series":[75],"tracks":[77],"aligned":[78],"genomic":[81],"sequence.":[82],"Sequence":[83],"may":[87],"also":[88,124],"be":[89,114],"viewed":[90],"text-based":[93],"tabular":[94],"format":[95],"or":[96],"downloaded":[97],"tab-delimited":[99],"flat":[100],"files.":[101],"Database,":[105],"browsing":[106],"tools":[107],"downloadable":[109],"files":[111],"can":[112],"all":[113],"found":[115],"Bioinformatics":[120],"website":[121],"(http://genome.ucsc.edu),":[122],"which":[123],"contains":[125],"links":[126],"documentation":[128],"technical":[131],"information.":[132]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":61},{"year":2023,"cited_by_count":65},{"year":2022,"cited_by_count":61},{"year":2021,"cited_by_count":55},{"year":2020,"cited_by_count":59},{"year":2019,"cited_by_count":41},{"year":2018,"cited_by_count":39},{"year":2017,"cited_by_count":40},{"year":2016,"cited_by_count":36},{"year":2015,"cited_by_count":53},{"year":2014,"cited_by_count":53},{"year":2013,"cited_by_count":54},{"year":2012,"cited_by_count":81}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
