{"id":"https://openalex.org/W2148853951","doi":"https://doi.org/10.1093/nar/gkg095","title":"The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003","display_name":"The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2148853951","doi":"https://doi.org/10.1093/nar/gkg095","mag":"2148853951","pmid":"https://pubmed.ncbi.nlm.nih.gov/12520024"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg095","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg095","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/365/7127615/gkg095.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/365/7127615/gkg095.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060351991","display_name":"Brigitte Boeckmann","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"B. Boeckmann","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland. brigitte.boeckmann@isb-sib.ch"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland. brigitte.boeckmann@isb-sib.ch","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5060351991"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":188.8498,"has_fulltext":false,"cited_by_count":3996,"citation_normalized_percentile":{"value":1.0,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"1","first_page":"365","last_page":"370"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.915096640586853},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.6668165922164917},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5100324749946594},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.39550191164016724},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08061841130256653}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.915096640586853},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.6668165922164917},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5100324749946594},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.39550191164016724},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08061841130256653}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019843","descriptor_name":"Archaeal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019843","descriptor_name":"Archaeal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019843","descriptor_name":"Archaeal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkg095","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg095","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/365/7127615/gkg095.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12520024","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12520024","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:unige.ch:unige:44272","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:44272","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 0305-1048","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.107.5829","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.107.5829","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/31/1/365.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.872.170","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.872.170","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/31/1/365.full.pdf","raw_type":"text"},{"id":"pmh:oai:doc.rero.ch:297591","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:158720","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC165542","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165542","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165542","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg095","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg095","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/365/7127615/gkg095.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2148853951.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W159602724","https://openalex.org/W1971403296","https://openalex.org/W1972549397","https://openalex.org/W1994025789","https://openalex.org/W2013340095","https://openalex.org/W2077689651","https://openalex.org/W2079031049","https://openalex.org/W2081269341","https://openalex.org/W2093748431","https://openalex.org/W2094010958","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2109867978","https://openalex.org/W2110041134","https://openalex.org/W2111876537","https://openalex.org/W2117019496","https://openalex.org/W2124073224","https://openalex.org/W2137859534","https://openalex.org/W2141885858","https://openalex.org/W2143173841","https://openalex.org/W2149244603","https://openalex.org/W2150118470","https://openalex.org/W2150831520","https://openalex.org/W2152178770","https://openalex.org/W2159799774","https://openalex.org/W2163181687","https://openalex.org/W2165270659","https://openalex.org/W2166699767","https://openalex.org/W2614575602","https://openalex.org/W2949977409","https://openalex.org/W3217283393","https://openalex.org/W4210531204","https://openalex.org/W4213393525","https://openalex.org/W4241156921","https://openalex.org/W4242739003"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W4324018414","https://openalex.org/W2170381940","https://openalex.org/W2472351724"],"abstract_inverted_index":{"The":[0],"SWISS-PROT":[1,49,59,183],"protein":[2,20,95,148],"knowledgebase":[3],"(http://www.expasy.org/sprot/":[4],"and":[5,36,78,118,128],"http://www.ebi.ac.uk/swissprot/)":[6],"connects":[7],"amino":[8],"acid":[9],"sequences":[10,149],"with":[11,138],"the":[12,16,46,69,84,99,115,175],"current":[13,139],"knowledge":[14,173],"in":[15,155],"Life":[17],"Sciences.":[18],"Each":[19],"entry":[21],"provides":[22,60],"an":[23],"interdisciplinary":[24],"overview":[25],"of":[26,48,71,86,93,98,121,130,163],"relevant":[27,180],"information":[28],"by":[29,114,157,178],"bringing":[30],"together":[31],"experimental":[32],"results,":[33],"computed":[34],"features":[35],"sometimes":[37],"even":[38],"contradictory":[39],"conclusions.":[40],"Detailed":[41],"expertise":[42],"that":[43,150],"goes":[44],"beyond":[45],"scope":[47],"is":[50,109],"made":[51],"available":[52],"via":[53],"direct":[54],"links":[55],"to":[56,82,104,135,145,170,174,182],"specialised":[57],"databases.":[58],"annotated":[61],"entries":[62,72],"for":[63,90,112],"all":[64,94,147],"species,":[65],"but":[66],"concentrates":[67],"on":[68],"annotation":[70,89,100],"from":[73],"human":[74],"(the":[75],"HPI":[76],"project)":[77],"other":[79,105],"model":[80],"organisms":[81],"ensure":[83],"presence":[85],"high":[87],"quality":[88],"representative":[91],"members":[92],"families.":[96],"Part":[97],"can":[101],"be":[102],"transferred":[103],"family":[106],"members,":[107],"as":[108],"already":[110],"done":[111],"microbes":[113],"High-quality":[116],"Automated":[117],"Manual":[119],"Annotation":[120],"microbial":[122],"Proteomes":[123],"(HAMAP)":[124],"project.":[125],"Protein":[126],"families":[127],"groups":[129],"proteins":[131],"are":[132,151,168],"regularly":[133],"reviewed":[134],"keep":[136],"up":[137],"scientific":[140,176],"findings.":[141],"Complementarily,":[142],"TrEMBL":[143],"strives":[144],"comprise":[146],"not":[152],"yet":[153],"represented":[154],"SWISS-PROT,":[156],"incorporating":[158],"a":[159],"perpetually":[160],"increasing":[161],"level":[162],"mostly":[164],"automated":[165],"annotation.":[166],"Researchers":[167],"welcome":[169],"contribute":[171],"their":[172],"community":[177],"submitting":[179],"findings":[181],"at":[184],"swiss-prot@expasy.org.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":61},{"year":2025,"cited_by_count":202},{"year":2024,"cited_by_count":213},{"year":2023,"cited_by_count":166},{"year":2022,"cited_by_count":264},{"year":2021,"cited_by_count":191},{"year":2020,"cited_by_count":162},{"year":2019,"cited_by_count":114},{"year":2018,"cited_by_count":117},{"year":2017,"cited_by_count":76},{"year":2016,"cited_by_count":85},{"year":2015,"cited_by_count":98},{"year":2014,"cited_by_count":112},{"year":2013,"cited_by_count":106},{"year":2012,"cited_by_count":95}],"updated_date":"2026-06-28T08:01:55.173337","created_date":"2025-10-10T00:00:00"}
