{"id":"https://openalex.org/W2109442590","doi":"https://doi.org/10.1093/nar/gkg042","title":"Active Sequences Collection (ASC) database: a new tool to assign functions to protein sequences","display_name":"Active Sequences Collection (ASC) database: a new tool to assign functions to protein sequences","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2109442590","doi":"https://doi.org/10.1093/nar/gkg042","mag":"2109442590","pmid":"https://pubmed.ncbi.nlm.nih.gov/12520027"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg042","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/379/7126343/gkg042.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/379/7126343/gkg042.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032380606","display_name":"Angelo Facchiano","orcid":"https://orcid.org/0000-0002-7077-4912"},"institutions":[{"id":"https://openalex.org/I4210087001","display_name":"Institute of Food Science","ror":"https://ror.org/0013zhk30","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210087001","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"A. M. Facchiano","raw_affiliation_strings":["Istituto di Scienze dell'Alimentazione, CNR-via Roma 52A/C 83100 Avellino, Italy. angelo.facchiano@isa.av.cnr.it","Istituto di Scienze dell'Alimentazione, CNR-via Roma 52A/C 83100 Avellino, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto di Scienze dell'Alimentazione, CNR-via Roma 52A/C 83100 Avellino, Italy. angelo.facchiano@isa.av.cnr.it","institution_ids":["https://openalex.org/I4210087001"]},{"raw_affiliation_string":"Istituto di Scienze dell'Alimentazione, CNR-via Roma 52A/C 83100 Avellino, Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5032380606"],"corresponding_institution_ids":["https://openalex.org/I4210087001"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.7593,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.85058826,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"31","issue":"1","first_page":"379","last_page":"382"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11721","display_name":"Blood properties and coagulation","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11721","display_name":"Blood properties and coagulation","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6335813999176025},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6138941049575806},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.45730358362197876},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4548918902873993},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.43296903371810913},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4171745777130127},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34243687987327576},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3390582501888275},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10941067337989807},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10141554474830627}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6335813999176025},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6138941049575806},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.45730358362197876},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4548918902873993},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.43296903371810913},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4171745777130127},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34243687987327576},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3390582501888275},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10941067337989807},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10141554474830627},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011503","descriptor_name":"Transglutaminases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011503","descriptor_name":"Transglutaminases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011503","descriptor_name":"Transglutaminases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkg042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg042","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/379/7126343/gkg042.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12520027","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12520027","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.631.8979","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.631.8979","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/31/1/379.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:158675","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC165489","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165489","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165489","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg042","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/379/7126343/gkg042.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109442590.pdf","grobid_xml":"https://content.openalex.org/works/W2109442590.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W2134851","https://openalex.org/W143263963","https://openalex.org/W1570753218","https://openalex.org/W1606499176","https://openalex.org/W1667478348","https://openalex.org/W1892184508","https://openalex.org/W1967403398","https://openalex.org/W1983778749","https://openalex.org/W1986366555","https://openalex.org/W1994570371","https://openalex.org/W1994791316","https://openalex.org/W2005425364","https://openalex.org/W2018727161","https://openalex.org/W2020921331","https://openalex.org/W2022356764","https://openalex.org/W2022814481","https://openalex.org/W2023135519","https://openalex.org/W2034386363","https://openalex.org/W2049202495","https://openalex.org/W2064789871","https://openalex.org/W2072667508","https://openalex.org/W2077725528","https://openalex.org/W2089191416","https://openalex.org/W2103627235","https://openalex.org/W2107536122","https://openalex.org/W2114286636","https://openalex.org/W2118052953","https://openalex.org/W2134904267","https://openalex.org/W2165975808","https://openalex.org/W2169102763","https://openalex.org/W4210650872","https://openalex.org/W4240629327"],"related_works":["https://openalex.org/W178231042","https://openalex.org/W2360028903","https://openalex.org/W4280543773","https://openalex.org/W2366083136","https://openalex.org/W2387622493","https://openalex.org/W1932132538","https://openalex.org/W2357832196","https://openalex.org/W1566252468","https://openalex.org/W2362452928","https://openalex.org/W4200375594"],"abstract_inverted_index":{"Active":[0],"Sequences":[1],"Collection":[2],"(ASC)":[3],"is":[4,99,130],"a":[5,21,35,42,56,102,140],"collection":[6,36,43,57,98],"of":[7,28,31,37,44,50,58,85,96,110,161],"amino":[8],"acid":[9],"sequences,":[10],"with":[11,20,61,149],"an":[12,155],"unique":[13],"feature:":[14],"only":[15],"short":[16,59],"sequences":[17,148],"are":[18,70],"collected,":[19],"demonstrated":[22,62],"biological":[23,63],"activity.":[24,64],"The":[25,82,93],"current":[26,83],"version":[27,84],"ASC":[29,86,128],"consists":[30],"three":[32],"sections:":[33],"DORRS,":[34],"active":[38,47,112,164],"RGD-containing":[39],"peptides;":[40],"TRANSIT,":[41],"protein":[45,111,120,147],"regions":[46],"as":[48,72,74,152,154],"substrates":[49],"transglutaminase":[51],"enzyme":[52],"(TGase),":[53],"and":[54],"BAC,":[55],"peptides":[60],"Literature":[65],"references":[66,76],"for":[67,124],"each":[68],"entry":[69],"reported,":[71],"well":[73,153],"cross":[75],"to":[77,100,105,115,144,158],"other":[78],"databases,":[79],"when":[80],"available.":[81],"includes":[87],"more":[88],"than":[89],"800":[90],"different":[91],"entries.":[92],"main":[94],"scope":[95],"this":[97],"offer":[101],"new":[103,162],"tool":[104],"investigate":[106],"the":[107,133,150],"structural":[108],"features":[109],"sites,":[113],"additionally":[114],"similarity":[116],"searches":[117],"against":[118],"large":[119],"databases":[121],"or":[122],"searching":[123],"known":[125],"functional":[126],"patterns.":[127],"database":[129],"available":[131],"at":[132],"web":[134],"address":[135],"http://crisceb.unina2.it/ASC/":[136],"which":[137],"also":[138],"offers":[139],"dedicated":[141],"query":[142],"interface":[143,157],"compare":[145],"user-defined":[146],"database,":[151],"updating":[156],"allow":[159],"contribution":[160],"referenced":[163],"sequences.":[165]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
