{"id":"https://openalex.org/W2101163218","doi":"https://doi.org/10.1093/nar/gkg041","title":"PlantProm: a database of plant promoter sequences","display_name":"PlantProm: a database of plant promoter sequences","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2101163218","doi":"https://doi.org/10.1093/nar/gkg041","mag":"2101163218","pmid":"https://pubmed.ncbi.nlm.nih.gov/12519961"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg041","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/114/7126332/gkg041.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/114/7126332/gkg041.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054058122","display_name":"Ilham A. Shahmuradov","orcid":null},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"I. A. Shahmuradov","raw_affiliation_strings":["Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, TW20 0EX, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, TW20 0EX, UK","institution_ids":["https://openalex.org/I184558857"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5054058122"],"corresponding_institution_ids":["https://openalex.org/I184558857"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":17.1734,"has_fulltext":true,"cited_by_count":291,"citation_normalized_percentile":{"value":0.99155822,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"31","issue":"1","first_page":"114","last_page":"117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.8810153007507324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8126548528671265},{"id":"https://openalex.org/keywords/tata-box","display_name":"TATA box","score":0.653802216053009},{"id":"https://openalex.org/keywords/consensus-sequence","display_name":"Consensus sequence","score":0.5460607409477234},{"id":"https://openalex.org/keywords/caat-box","display_name":"CAAT box","score":0.5435452461242676},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5179428458213806},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.479032427072525},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.44247063994407654},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34977781772613525},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34830889105796814},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.23103836178779602},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14936918020248413},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07532122731208801}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.8810153007507324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8126548528671265},{"id":"https://openalex.org/C65888428","wikidata":"https://www.wikidata.org/wiki/Q1413955","display_name":"TATA box","level":5,"score":0.653802216053009},{"id":"https://openalex.org/C54985914","wikidata":"https://www.wikidata.org/wiki/Q1295754","display_name":"Consensus sequence","level":4,"score":0.5460607409477234},{"id":"https://openalex.org/C179716448","wikidata":"https://www.wikidata.org/wiki/Q2508056","display_name":"CAAT box","level":5,"score":0.5435452461242676},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5179428458213806},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.479032427072525},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.44247063994407654},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34977781772613525},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34830889105796814},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.23103836178779602},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14936918020248413},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07532122731208801},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012319","descriptor_name":"RNA Polymerase II","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020218","descriptor_name":"Response Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020218","descriptor_name":"Response Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020218","descriptor_name":"Response Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":13,"locations":[{"id":"doi:10.1093/nar/gkg041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg041","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/114/7126332/gkg041.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12519961","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12519961","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.109.5924","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.109.5924","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/31/1/114.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.333.9274","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.333.9274","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/31/1/114.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:158674","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC165488","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165488","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:165488","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165488","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:repository.royalholloway.ac.uk:ebf0e88c-f48b-f522-fbd9-66f54a9033b7/1","is_oa":false,"landing_page_url":"https://repository.royalholloway.ac.uk/items/ebf0e88c-f48b-f522-fbd9-66f54a9033b7/1/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401976","display_name":"Royal Holloway Digital Repository (University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I166337079","host_organization_name":"Queen Mary University of London","host_organization_lineage":["https://openalex.org/I166337079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 31 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repository.royalholloway.ac.uk:ebf0e88c-f48b-f522-fbd9-66f54a9033b7/2","is_oa":false,"landing_page_url":"https://repository.royalholloway.ac.uk/items/ebf0e88c-f48b-f522-fbd9-66f54a9033b7/2/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401976","display_name":"Royal Holloway Digital Repository (University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I166337079","host_organization_name":"Queen Mary University of London","host_organization_lineage":["https://openalex.org/I166337079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 31 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repository.royalholloway.ac.uk:ebf0e88c-f48b-f522-fbd9-66f54a9033b7/4","is_oa":false,"landing_page_url":"https://repository.royalholloway.ac.uk/items/ebf0e88c-f48b-f522-fbd9-66f54a9033b7/4/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401062","display_name":"Royal Holloway Digital Repository (Royal Holloway University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184558857","host_organization_name":"Royal Holloway University of London","host_organization_lineage":["https://openalex.org/I184558857"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 31 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repository.royalholloway.ac.uk:ebf0e88c-f48b-f522-fbd9-66f54a9033b7/5","is_oa":false,"landing_page_url":"https://repository.royalholloway.ac.uk/items/ebf0e88c-f48b-f522-fbd9-66f54a9033b7/5/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401062","display_name":"Royal Holloway Digital Repository (Royal Holloway University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184558857","host_organization_name":"Royal Holloway University of London","host_organization_lineage":["https://openalex.org/I184558857"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 31 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repository.royalholloway.ac.uk:ebf0e88c-f48b-f522-fbd9-66f54a9033b7/6","is_oa":false,"landing_page_url":"https://repository.royalholloway.ac.uk/items/ebf0e88c-f48b-f522-fbd9-66f54a9033b7/6/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401062","display_name":"Royal Holloway Digital Repository (Royal Holloway University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184558857","host_organization_name":"Royal Holloway University of London","host_organization_lineage":["https://openalex.org/I184558857"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 31 (1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:repository.royalholloway.ac.uk:ebf0e88c-f48b-f522-fbd9-66f54a9033b7/7","is_oa":false,"landing_page_url":"https://repository.royalholloway.ac.uk/items/ebf0e88c-f48b-f522-fbd9-66f54a9033b7/7/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401062","display_name":"Royal Holloway Digital Repository (Royal Holloway University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184558857","host_organization_name":"Royal Holloway University of London","host_organization_lineage":["https://openalex.org/I184558857"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 31 (1)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg041","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/114/7126332/gkg041.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320335935","display_name":"Royal Holloway, University of London","ror":"https://ror.org/04g2vpn86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101163218.pdf","grobid_xml":"https://content.openalex.org/works/W2101163218.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1494075612","https://openalex.org/W1969772407","https://openalex.org/W2032284355","https://openalex.org/W2035908878","https://openalex.org/W2072443295","https://openalex.org/W2100945610","https://openalex.org/W2108011868","https://openalex.org/W2108638877","https://openalex.org/W2109553072","https://openalex.org/W2140115103","https://openalex.org/W2150557879","https://openalex.org/W2156622081","https://openalex.org/W3216020230","https://openalex.org/W4235874578","https://openalex.org/W4237912953"],"related_works":["https://openalex.org/W2001011649","https://openalex.org/W2392050818","https://openalex.org/W341178774","https://openalex.org/W4245957168","https://openalex.org/W4254053069","https://openalex.org/W2033386886","https://openalex.org/W2093094564","https://openalex.org/W1999966058","https://openalex.org/W2145491097","https://openalex.org/W1995839332"],"abstract_inverted_index":{"PlantProm":[0,35,152],"DB,":[1],"a":[2,140],"plant":[3,28,118],"promoter":[4,13,59,82,119,147],"database,":[5],"is":[6,96,149,154],"an":[7],"annotated,":[8],"non-redundant":[9],"collection":[10],"of":[11,34,57,74,90,139],"proximal":[12],"sequences":[14],"for":[15,81,105,146],"RNA":[16],"polymerase":[17],"II":[18],"with":[19,64],"experimentally":[20],"determined":[21],"transcription":[22],"start":[23],"site(s),":[24],"TSS,":[25],"from":[26,46],"various":[27],"species.":[29],"The":[30,110],"first":[31],"release":[32],"(2002.01)":[33],"DB":[36,153],"contains":[37],"305":[38],"entries":[39],"including":[40],"71,":[41],"220":[42],"and":[43,49,76,86,100,107,136,158],"14":[44],"promoters":[45,75],"monocot,":[47],"dicot":[48],"other":[50],"plants,":[51],"respectively.":[52],"It":[53],"provides":[54],"DNA":[55],"sequence":[56],"the":[58,67,137],"regions":[60],"(-200":[61],":":[62],"+51)":[63],"TSS":[65],"on":[66,127],"fixed":[68],"position":[69],"+201,":[70],"taxonomic/promoter":[71],"type":[72],"classification":[73],"Nucleotide":[77],"Frequency":[78],"Matrices":[79],"(NFM)":[80],"elements:":[83],"TATA-box,":[84],"CCAAT-box":[85],"TSS-motif":[87],"(Inr).":[88],"Analysis":[89],"TSS-motifs":[91],"revealed":[92],"that":[93],"their":[94],"composition":[95],"different":[97],"in":[98,116],"dicots":[99],"monocots,":[101],"as":[102,104,113],"well":[103],"TATA":[106],"TATA-less":[108],"promoters.":[109],"database":[111],"serves":[112],"learning":[114],"set":[115],"developing":[117],"prediction":[120],"programs.":[121],"One":[122],"such":[123],"program":[124],"(TSSP)":[125],"based":[126],"discriminant":[128],"analysis":[129],"has":[130],"been":[131],"created":[132],"by":[133],"Softberry":[134],"Inc.":[135],"application":[138],"support":[141],"ftp:":[142],"vector":[143],"machine":[144],"approach":[145],"identification":[148],"under":[150],"development.":[151],"available":[155],"at":[156],"http://mendel.cs.rhul.ac.uk/":[157],"http://www.softberry.com/.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
