{"id":"https://openalex.org/W4245270879","doi":"https://doi.org/10.1093/nar/gkg019","title":"tmRDB (tmRNA database)","display_name":"tmRDB (tmRNA database)","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W4245270879","doi":"https://doi.org/10.1093/nar/gkg019"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg019","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/446/7125945/gkg019.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/446/7125945/gkg019.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032552404","display_name":"Christian Zwieb","orcid":null},"institutions":[{"id":"https://openalex.org/I90436673","display_name":"The University of Texas Health Science Center at Tyler","ror":"https://ror.org/01sps7q28","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I90436673"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C. Zwieb","raw_affiliation_strings":["Department of Molecular Biology, The University of Texas Health Science Center at Tyler, 11937 US Highway 271, Tyler, TX 75708-3154, USA. zwieb@uthct.edu"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology, The University of Texas Health Science Center at Tyler, 11937 US Highway 271, Tyler, TX 75708-3154, USA. zwieb@uthct.edu","institution_ids":["https://openalex.org/I90436673"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5032552404"],"corresponding_institution_ids":["https://openalex.org/I90436673"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":2.7284,"has_fulltext":false,"cited_by_count":76,"citation_normalized_percentile":{"value":0.90693181,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"31","issue":"1","first_page":"446","last_page":"447"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7530630826950073},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4754863977432251},{"id":"https://openalex.org/keywords/transfer-rna","display_name":"Transfer RNA","score":0.4657488763332367},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4073626399040222},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3256489336490631},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26163074374198914},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1620025634765625},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13709676265716553}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7530630826950073},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4754863977432251},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.4657488763332367},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4073626399040222},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3256489336490631},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26163074374198914},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1620025634765625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13709676265716553}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/nar/gkg019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg019","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/446/7125945/gkg019.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg019","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/446/7125945/gkg019.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4245270879.pdf","grobid_xml":"https://content.openalex.org/works/W4245270879.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1555471479","https://openalex.org/W1877913805","https://openalex.org/W2002031194","https://openalex.org/W2008469528","https://openalex.org/W2012573942","https://openalex.org/W2091961058","https://openalex.org/W2119405291","https://openalex.org/W2134453550","https://openalex.org/W2136788863","https://openalex.org/W2144660787","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2053409009","https://openalex.org/W2085116890","https://openalex.org/W2084127857","https://openalex.org/W2011021361","https://openalex.org/W2079671437","https://openalex.org/W2129693079","https://openalex.org/W2105242444","https://openalex.org/W1784802272","https://openalex.org/W2965151544","https://openalex.org/W1982499913"],"abstract_inverted_index":{"Maintained":[0],"at":[1,9,18,26],"the":[2,12,19,35,52,73,109,112,152,155,167,179,187],"University":[3],"of":[4,54,63,88,100,108,149,160,166,189],"Texas":[5],"Health":[6],"Science":[7],"Center":[8],"Tyler,":[10],"Texas,":[11],"tmRNA":[13,102,124,143,162],"database":[14],"(tmRDB)":[15],"is":[16],"accessible":[17],"URL":[20],"http://psyche.uthct.edu/dbs/tmRDB/tmRDB.html":[21],"with":[22],"mirror":[23],"sites":[24],"located":[25],"Auburn":[27],"University,":[28],"Auburn,":[29],"Alabama":[30],"(":[31,41],"http://www.ag.auburn.edu/mirror/tmRDB/":[32],")":[33],"and":[34,47,65,67,111,120,157,169,192],"Bioinformatics":[36],"Research":[37],"Center,":[38],"Aarhus,":[39],"Denmark":[40],"http://www.bioinf.au.dk/tmRDB/":[42],").":[43],"The":[44,123,142],"tmRDB":[45],"collects":[46],"distributes":[48],"information":[49],"relevant":[50],"to":[51,71,79,133],"study":[53],"tmRNA.":[55],"In":[56,85],"trans":[57],"-translation,":[58],"this":[59,86],"molecule":[60],"combines":[61],"properties":[62],"tRNA":[64],"mRNA":[66],"binds":[68],"several":[69],"proteins":[70,172],"form":[72],"tmRNP.":[74],"Related":[75],"RNPs":[76],"are":[77,116,126],"likely":[78],"be":[80],"functional":[81],"in":[82,118,146,173,186],"all":[83],"bacteria.":[84],"release":[87],"tmRDB,":[89],"186":[90],"new":[91],"entries":[92],"from":[93],"10":[94],"bacterial":[95],"groups":[96],"for":[97,154,178],"a":[98,147],"total":[99],"274":[101],"sequences":[103,125],"have":[104],"been":[105,184],"added.":[106],"Lists":[107],"tmRNAs":[110,168],"corresponding":[113],"tmRNA-encoded":[114],"tag-peptides":[115],"presented":[117],"alphabetical":[119],"phylogenetic":[121],"order.":[122],"aligned":[127],"manually,":[128],"assisted":[129],"by":[130,138],"computational":[131],"tools,":[132],"determine":[134],"base":[135],"pairs":[136],"supported":[137],"comparative":[139],"sequence":[140],"analysis.":[141],"alignment,":[144],"available":[145],"variety":[148],"formats,":[150],"provides":[151],"basis":[153],"secondary":[156],"tertiary":[158],"structure":[159,191],"each":[161],"molecule.":[163],"Three-dimensional":[164],"models":[165],"their":[170],"associated":[171],"PDB":[174],"format":[175],"give":[176],"evidence":[177],"recent":[180],"progress":[181],"that":[182],"has":[183],"made":[185],"understanding":[188],"tmRNP":[190],"function.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":7},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-17T09:09:15.849793","created_date":"2025-10-10T00:00:00"}
