{"id":"https://openalex.org/W2059045119","doi":"https://doi.org/10.1093/nar/gkg017","title":"MEPD: a Medaka gene expression pattern database","display_name":"MEPD: a Medaka gene expression pattern database","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2059045119","doi":"https://doi.org/10.1093/nar/gkg017","mag":"2059045119","pmid":"https://pubmed.ncbi.nlm.nih.gov/12519950"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg017","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/gkg017","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001254198","display_name":"Thorsten Henrich","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T. Henrich","raw_affiliation_strings":["Japan Science and Technology Corporation, ERATO Kondoh differentiation signaling project, Kinki-chihou Hatsumei Center Building, Yoshida-Kawaramachi 14, Sakyo-ku, Kyoto 606-8305, Japan. henrich@dsp.jst.go.jp","PRESTO, Japan Science and Technology Agency"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Japan Science and Technology Corporation, ERATO Kondoh differentiation signaling project, Kinki-chihou Hatsumei Center Building, Yoshida-Kawaramachi 14, Sakyo-ku, Kyoto 606-8305, Japan. henrich@dsp.jst.go.jp","institution_ids":["https://openalex.org/I4210086780"]},{"raw_affiliation_string":"PRESTO, Japan Science and Technology Agency","institution_ids":["https://openalex.org/I4210086780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001254198"],"corresponding_institution_ids":["https://openalex.org/I4210086780"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":1.409,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.7991453,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"31","issue":"1","first_page":"72","last_page":"74"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9429000020027161,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oryzias","display_name":"Oryzias","score":0.9550822973251343},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9035564661026001},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.6469665765762329},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5434428453445435},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5047954320907593},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4740162491798401},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3694039583206177},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.341126024723053},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08628448843955994}],"concepts":[{"id":"https://openalex.org/C2777289358","wikidata":"https://www.wikidata.org/wiki/Q2371293","display_name":"Oryzias","level":3,"score":0.9550822973251343},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9035564661026001},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.6469665765762329},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5434428453445435},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5047954320907593},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4740162491798401},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3694039583206177},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.341126024723053},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08628448843955994}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009990","descriptor_name":"Oryzias","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkg017","is_oa":false,"landing_page_url":"https://doi.org/10.1093/nar/gkg017","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12519950","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12519950","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:165464","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165464","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165464","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:165464","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","display_name":"Life below water","score":0.5600000023841858}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W102944501","https://openalex.org/W1514300652","https://openalex.org/W1992871815","https://openalex.org/W1993722962","https://openalex.org/W2001099074","https://openalex.org/W2026828959","https://openalex.org/W2036314401","https://openalex.org/W2070688276","https://openalex.org/W2107783325","https://openalex.org/W2132845755","https://openalex.org/W2136887407","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W4255813571","https://openalex.org/W4386691707","https://openalex.org/W4243659588","https://openalex.org/W4232714111","https://openalex.org/W4245872753","https://openalex.org/W2098503167","https://openalex.org/W563308119","https://openalex.org/W4249308191","https://openalex.org/W4244230074","https://openalex.org/W4238041514"],"abstract_inverted_index":{"The":[0,82,94],"Medaka":[1,21,101],"Expression":[2,24],"Pattern":[3],"Database":[4],"(MEPD)":[5],"stores":[6],"and":[7,35,45,47,63,75,92,105],"integrates":[8],"information":[9],"of":[10,16,26,54,58],"gene":[11],"expression":[12],"during":[13],"embryonic":[14],"development":[15],"the":[17,59,69,90,100,119],"small":[18],"freshwater":[19],"fish":[20],"(Oryzias":[22],"latipes).":[23],"patterns":[25],"genes":[27],"identified":[28],"by":[29,33,36],"ESTs":[30,60,67],"are":[31,61,71,85],"documented":[32],"images":[34],"descriptions":[37],"through":[38,48,65,118],"parameters":[39],"such":[40],"as":[41],"staining":[42],"intensity,":[43],"category":[44],"comments":[46],"a":[49,97],"comprehensive,":[50],"hierarchically":[51],"organized":[52],"dictionary":[53],"anatomical":[55],"terms.":[56],"Sequences":[57],"available":[62],"searchable":[64],"BLAST.":[66],"in":[68],"database":[70,91],"clustered":[72],"upon":[73],"entry":[74],"have":[76],"been":[77],"blasted":[78],"against":[79],"public":[80],"data-bases.":[81],"BLAST":[83],"results":[84],"updated":[86],"regularly,":[87],"stored":[88],"within":[89,99],"searchable.":[93],"MEPD":[95,115],"is":[96,116],"project":[98],"Genome":[102],"Initiative":[103],"(MGI)":[104],"entries":[106],"will":[107],"be":[108],"interconnected":[109],"to":[110],"integrated":[111],"genomic":[112],"map":[113],"databases.":[114],"accessible":[117],"WWW":[120],"at":[121],"http://medaka.dsp.jst.go.jp/MEPD.":[122]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
