{"id":"https://openalex.org/W2168518560","doi":"https://doi.org/10.1093/nar/gkg010","title":"SDAP: database and computational tools for allergenic proteins","display_name":"SDAP: database and computational tools for allergenic proteins","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2168518560","doi":"https://doi.org/10.1093/nar/gkg010","mag":"2168518560","pmid":"https://pubmed.ncbi.nlm.nih.gov/12520022"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkg010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg010","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/359/7125801/gkg010.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/nar/article-pdf/31/1/359/7125801/gkg010.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006473765","display_name":"Ovidiu Ivanciuc","orcid":null},"institutions":[{"id":"https://openalex.org/I55302922","display_name":"The University of Texas Medical Branch at Galveston","ror":"https://ror.org/016tfm930","country_code":"US","type":"education","lineage":["https://openalex.org/I55302922"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"O. Ivanciuc","raw_affiliation_strings":["Sealy Center for Structural Biology, Department of Human Biological Chemistry and Genetics, University of Texas Medical Branch, 310 University Boulevard, Galveston, TX 77555-1157, USA"],"affiliations":[{"raw_affiliation_string":"Sealy Center for Structural Biology, Department of Human Biological Chemistry and Genetics, University of Texas Medical Branch, 310 University Boulevard, Galveston, TX 77555-1157, USA","institution_ids":["https://openalex.org/I55302922"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5006473765"],"corresponding_institution_ids":["https://openalex.org/I55302922"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":null,"fwci":3.4972,"has_fulltext":true,"cited_by_count":279,"citation_normalized_percentile":{"value":0.93547078,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"31","issue":"1","first_page":"359","last_page":"362"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10877","display_name":"Allergic Rhinitis and Sensitization","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10877","display_name":"Allergic Rhinitis and Sensitization","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10634","display_name":"Food Allergy and Anaphylaxis Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10051","display_name":"Asthma and respiratory diseases","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7691200375556946},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7328522205352783},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.689785361289978},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.627489447593689},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49339428544044495},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.477192759513855},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.443654328584671},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3111034333705902},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2631586790084839},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09743893146514893},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.09666106104850769}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7691200375556946},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7328522205352783},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.689785361289978},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.627489447593689},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49339428544044495},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.477192759513855},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.443654328584671},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3111034333705902},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2631586790084839},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09743893146514893},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.09666106104850769},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007073","descriptor_name":"Immunoglobulin E","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkg010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg010","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/359/7125801/gkg010.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:12520022","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12520022","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.323.2236","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.323.2236","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/31/1/359.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.98.7386","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.98.7386","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/31/1/359.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:158650","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC165457","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165457","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:165457","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/165457","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkg010","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkg010","pdf_url":"https://academic.oup.com/nar/article-pdf/31/1/359/7125801/gkg010.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168518560.pdf","grobid_xml":"https://content.openalex.org/works/W2168518560.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W19412885","https://openalex.org/W1977911529","https://openalex.org/W1990979689","https://openalex.org/W1991286271","https://openalex.org/W1991324354","https://openalex.org/W1998173128","https://openalex.org/W2003144438","https://openalex.org/W2020869241","https://openalex.org/W2032975429","https://openalex.org/W2037263319","https://openalex.org/W2047225253","https://openalex.org/W2054305532","https://openalex.org/W2077324104","https://openalex.org/W2084466582","https://openalex.org/W2096525273","https://openalex.org/W2099057076","https://openalex.org/W2104042418","https://openalex.org/W2104587248","https://openalex.org/W2111876811","https://openalex.org/W2112012991","https://openalex.org/W2123485701","https://openalex.org/W2125842347","https://openalex.org/W2147809382","https://openalex.org/W2148353702","https://openalex.org/W2158800284","https://openalex.org/W2413165350","https://openalex.org/W3148945153","https://openalex.org/W4213149192","https://openalex.org/W4230903726","https://openalex.org/W4241827326","https://openalex.org/W4251787227"],"related_works":["https://openalex.org/W2162388472","https://openalex.org/W4232154957","https://openalex.org/W2022209941","https://openalex.org/W4292058683","https://openalex.org/W4205671017","https://openalex.org/W4307362031","https://openalex.org/W4376646754","https://openalex.org/W3132544722","https://openalex.org/W3181892255","https://openalex.org/W2103435205"],"abstract_inverted_index":{"SDAP":[0,26,60,98,126,163],"(Structural":[1],"Database":[2],"of":[3,22,31,59,107,115,128,154],"Allergenic":[4],"Proteins)":[5],"is":[6,28,164],"a":[7,29],"web":[8],"server":[9],"that":[10,34],"provides":[11],"rapid,":[12],"cross-referenced":[13],"access":[14],"to":[15,46,78,112,119,139,147],"the":[16,36,40,52,64,79,125,152,167],"sequences,":[17],"structures":[18],"and":[19,50,72,75,88,132,146],"IgE":[20,70,129,155],"epitopes":[21,71,156],"allergenic":[23,48],"proteins.":[24],"The":[25,56,94],"core":[27],"series":[30],"CGI":[32],"scripts":[33],"process":[35],"user":[37],"queries,":[38],"interrogate":[39],"database,":[41],"perform":[42],"various":[43],"computations":[44],"related":[45],"protein":[47,81],"determinants":[49],"prepare":[51],"output":[53],"HTML":[54],"pages.":[55],"database":[57,127],"component":[58,96],"contains":[61],"information":[62],"about":[63],"allergen":[65],"name,":[66],"source,":[67],"sequence,":[68],"structure,":[69],"literature":[73,89],"references":[74],"easy":[76],"links":[77],"major":[80],"(PDB,":[82],"SWISS-PROT/TrEMBL,":[83],"PIR-ALN,":[84],"NCBI":[85],"Taxonomy":[86],"Browser)":[87],"(PubMed,":[90],"MEDLINE)":[91],"on-line":[92],"servers.":[93],"computational":[95],"in":[97],"uses":[99],"an":[100],"original":[101],"algorithm":[102],"based":[103],"on":[104],"conserved":[105],"properties":[106],"amino":[108],"acid":[109],"side":[110],"chains":[111],"identify":[113],"regions":[114],"known":[116,161],"allergens":[117,145],"similar":[118],"user-supplied":[120],"peptides":[121],"or":[122],"selected":[123],"from":[124],"epitopes.":[130],"This":[131],"other":[133],"bioinformatics":[134],"tools":[135],"can":[136],"be":[137],"used":[138],"rapidly":[140],"determine":[141],"potential":[142],"cross-reactivities":[143],"between":[144],"screen":[148],"novel":[149],"proteins":[150],"for":[151],"presence":[153],"they":[157],"may":[158],"share":[159],"with":[160],"allergens.":[162],"available":[165],"via":[166],"World":[168],"Wide":[169],"Web":[170],"at":[171],"http://fermi.utmb.edu/SDAP/.":[172]},"counts_by_year":[{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":20},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
