{"id":"https://openalex.org/W4377290754","doi":"https://doi.org/10.1093/nar/gkad444","title":"FLUXestimator: a webserver for predicting metabolic flux and variations using transcriptomics data","display_name":"FLUXestimator: a webserver for predicting metabolic flux and variations using transcriptomics data","publication_year":2023,"publication_date":"2023-05-22","ids":{"openalex":"https://openalex.org/W4377290754","doi":"https://doi.org/10.1093/nar/gkad444","pmid":"https://pubmed.ncbi.nlm.nih.gov/37216602"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad444","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad444/50417498/gkad444.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad444/50417498/gkad444.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100321164","display_name":"Zixuan Zhang","orcid":"https://orcid.org/0000-0002-6333-6834"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Zixuan Zhang","raw_affiliation_strings":["College of Software, College of Computer Science and Technology, Jilin University , Changchun\u00a0130012 , China","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Software, College of Computer Science and Technology, Jilin University , Changchun\u00a0130012 , China","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072356232","display_name":"Haiqi Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haiqi Zhu","raw_affiliation_strings":["Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040167145","display_name":"Pengtao Dang","orcid":"https://orcid.org/0009-0005-0144-0432"},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pengtao Dang","raw_affiliation_strings":["Department of Electric Computer Engineering, Purdue University , Indianapolis , IN\u00a046202 , USA","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electric Computer Engineering, Purdue University , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I135191193","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100404636","display_name":"Jia Wang","orcid":"https://orcid.org/0000-0002-2343-4755"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jia Wang","raw_affiliation_strings":["Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049482017","display_name":"Wennan Chang","orcid":"https://orcid.org/0000-0001-8113-8252"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wennan Chang","raw_affiliation_strings":["Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076270465","display_name":"Xiao Wang","orcid":"https://orcid.org/0000-0002-3090-9894"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Wang","raw_affiliation_strings":["Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040751753","display_name":"Norah Alghamdi","orcid":"https://orcid.org/0000-0002-6595-3609"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Norah Alghamdi","raw_affiliation_strings":["Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024073246","display_name":"Alex Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Lu","raw_affiliation_strings":["Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005845640","display_name":"Yong Zang","orcid":"https://orcid.org/0000-0003-0572-4756"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yong Zang","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057989682","display_name":"Wenzhuo Wu","orcid":"https://orcid.org/0000-0003-0362-6650"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenzhuo Wu","raw_affiliation_strings":["Department of Industrial Engineering, Purdue University , West Lafayette , IN\u00a047907 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial Engineering, Purdue University , West Lafayette , IN\u00a047907 , USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100429836","display_name":"Yijie Wang","orcid":"https://orcid.org/0000-0003-1656-8939"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yijie Wang","raw_affiliation_strings":["Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA"],"raw_orcid":"https://orcid.org/0000-0003-1656-8939","affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Indiana University , Bloomington , IN\u00a047405 , USA","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091997625","display_name":"Yu Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["College of Software, College of Computer Science and Technology, Jilin University , Changchun\u00a0130012 , China","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Software, College of Computer Science and Technology, Jilin University , Changchun\u00a0130012 , China","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042749306","display_name":"Sha Cao","orcid":"https://orcid.org/0000-0002-8645-848X"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sha Cao","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":"https://orcid.org/0000-0002-8645-848X","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012408594","display_name":"Chi Zhang","orcid":"https://orcid.org/0000-0001-9553-0925"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chi Zhang","raw_affiliation_strings":["Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA"],"raw_orcid":"https://orcid.org/0000-0001-9553-0925","affiliations":[{"raw_affiliation_string":"Department of Medical and Molecular Genetics and Center for Computational Biology and Bioinformatics, Indiana University School of Medicine , Indianapolis , IN\u00a046202 , USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5012408594","https://openalex.org/A5042749306","https://openalex.org/A5091997625"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.1998,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.77307173,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"51","issue":"W1","first_page":"W180","last_page":"W190"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6599042415618896},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6473080515861511},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.64434814453125},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5873004198074341},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5606980919837952},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5021765232086182},{"id":"https://openalex.org/keywords/flux","display_name":"Flux (metallurgy)","score":0.49604400992393494},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34433645009994507},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.330480694770813},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.20714205503463745},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09247192740440369},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.08200246095657349}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6599042415618896},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6473080515861511},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.64434814453125},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5873004198074341},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5606980919837952},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5021765232086182},{"id":"https://openalex.org/C68709404","wikidata":"https://www.wikidata.org/wiki/Q1134475","display_name":"Flux (metallurgy)","level":2,"score":0.49604400992393494},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34433645009994507},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.330480694770813},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.20714205503463745},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09247192740440369},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.08200246095657349},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkad444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad444","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad444/50417498/gkad444.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37216602","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37216602","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/38341","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/38341","pdf_url":"https://scholarworks.indianapolis.iu.edu/bitstreams/a3e38d75-36c1-4a10-a3e2-ec10bb57cf4d/download","source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10320190","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320190","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320190/pdf/gkad444.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad444","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad444/50417498/gkad444.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5256157662","display_name":null,"funder_award_id":"R35 GM150971","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6084660325","display_name":"CAREER: Mining biological functions from single cell multi-omics data","funder_award_id":"2047631","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6839358840","display_name":"CAREER: Disentangled learning of high dimensional biomedical data in the presence of inherent heterogeneity","funder_award_id":"2145314","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7768597027","display_name":"Computational modeling of stromal-immune cell interactions in triple-negative breast cancer","funder_award_id":"RSG-22-062-01-MM","funder_id":"https://openalex.org/F4320306095","funder_display_name":"American Cancer Society"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306095","display_name":"American Cancer Society","ror":"https://ror.org/02e463172"},{"id":"https://openalex.org/F4320330987","display_name":"Israel Institute for Biological Research","ror":"https://ror.org/05atez085"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4377290754.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1972744800","https://openalex.org/W1994628779","https://openalex.org/W2011307711","https://openalex.org/W2014058353","https://openalex.org/W2034543587","https://openalex.org/W2040751953","https://openalex.org/W2052543023","https://openalex.org/W2098014021","https://openalex.org/W2100542429","https://openalex.org/W2105567273","https://openalex.org/W2117692326","https://openalex.org/W2123879591","https://openalex.org/W2130410032","https://openalex.org/W2132530500","https://openalex.org/W2144944670","https://openalex.org/W2150315679","https://openalex.org/W2156182405","https://openalex.org/W2159482845","https://openalex.org/W2162115836","https://openalex.org/W2165642864","https://openalex.org/W2168613688","https://openalex.org/W2234115940","https://openalex.org/W2398956125","https://openalex.org/W2789128799","https://openalex.org/W2805619986","https://openalex.org/W2806146174","https://openalex.org/W2920146178","https://openalex.org/W2941275129","https://openalex.org/W2942678593","https://openalex.org/W2969302337","https://openalex.org/W2971544885","https://openalex.org/W2975143648","https://openalex.org/W3004047321","https://openalex.org/W3028396997","https://openalex.org/W3134862445","https://openalex.org/W3164692211","https://openalex.org/W3174064560","https://openalex.org/W3184580818","https://openalex.org/W3191401146","https://openalex.org/W3212661219","https://openalex.org/W4226061033","https://openalex.org/W4294216483","https://openalex.org/W6767133853","https://openalex.org/W6773939913"],"related_works":["https://openalex.org/W42525420","https://openalex.org/W4283390424","https://openalex.org/W2137270828","https://openalex.org/W1976072307","https://openalex.org/W4205440119","https://openalex.org/W2399513595","https://openalex.org/W4292104203","https://openalex.org/W1561393703","https://openalex.org/W2096576371","https://openalex.org/W4210616727"],"abstract_inverted_index":{"Quantitative":[0],"assessment":[1],"of":[2,88,124,145,191],"single":[3,17,35,48,54,82,101],"cell":[4,18,49,55,83,102],"fluxome":[5,56,78],"is":[6,20,57,128,157],"critical":[7],"for":[8,28,34,75,164,177],"understanding":[9],"the":[10,24,39,122,129,185,189],"metabolic":[11,77,137,179],"heterogeneity":[12,180],"in":[13,181],"diseases.":[14],"Unfortunately,":[15],"laboratory-based":[16],"fluxomics":[19],"currently":[21],"impractical,":[22],"and":[23,44,79,139,148,161,183],"current":[25],"computational":[26],"tools":[27,163],"flux":[29,103,138],"estimation":[30,104],"are":[31,167],"not":[32,58],"designed":[33],"cell-level":[36],"prediction.":[37],"Given":[38],"well-established":[40],"link":[41],"between":[42],"transcriptomic":[43],"metabolomic":[45],"profiles,":[46],"leveraging":[47],"transcriptomics":[50,86,119,143],"data":[51,87,144],"to":[52,114,134,187],"predict":[53],"only":[59],"feasible":[60],"but":[61],"also":[62],"an":[63,72],"urgent":[64],"task.":[65],"In":[66],"this":[67],"study,":[68],"we":[69],"present":[70],"FLUXestimator,":[71],"online":[73],"platform":[74],"predicting":[76,135],"variations":[80,141],"using":[81,142],"or":[84],"general":[85],"large":[89],"sample-size.":[90],"The":[91,154],"FLUXestimator":[92,127,155],"webserver":[93,156],"implements":[94],"a":[95,109,174],"recently":[96],"developed":[97],"unsupervised":[98],"approach":[99],"called":[100],"analysis":[105],"(scFEA),":[106],"which":[107],"uses":[108],"new":[110,175,192],"neural":[111],"network":[112],"architecture":[113],"estimate":[115],"reaction":[116],"rates":[117],"from":[118],"data.":[120],"To":[121],"best":[123],"our":[125],"knowledge,":[126],"first":[130],"web-based":[131],"tool":[132,172],"dedicated":[133],"cell-/sample-wise":[136],"metabolite":[140],"human,":[146],"mouse":[147],"15":[149],"other":[150],"common":[151],"experimental":[152],"organisms.":[153],"available":[158,168],"at":[159,169],"http://scFLUX.org/,":[160],"stand-alone":[162],"local":[165],"use":[166],"https://github.com/changwn/scFEA.":[170],"Our":[171],"provides":[173],"avenue":[176],"studying":[178],"diseases":[182],"has":[184],"potential":[186],"facilitate":[188],"development":[190],"therapeutic":[193],"strategies.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
