{"id":"https://openalex.org/W4377289796","doi":"https://doi.org/10.1093/nar/gkad413","title":"SMDB:\u00a0a Spatial Multimodal Data Browser","display_name":"SMDB:\u00a0a Spatial Multimodal Data Browser","publication_year":2023,"publication_date":"2023-05-22","ids":{"openalex":"https://openalex.org/W4377289796","doi":"https://doi.org/10.1093/nar/gkad413","pmid":"https://pubmed.ncbi.nlm.nih.gov/37216588"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad413","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad413/50417638/gkad413.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad413/50417638/gkad413.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085598180","display_name":"Ruifang Cao","orcid":"https://orcid.org/0000-0003-3121-1540"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruifang Cao","raw_affiliation_strings":["National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068195220","display_name":"Yunchao Ling","orcid":"https://orcid.org/0000-0002-5438-0753"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunchao Ling","raw_affiliation_strings":["National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014192337","display_name":"Jiayue Meng","orcid":"https://orcid.org/0009-0003-5744-063X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayue Meng","raw_affiliation_strings":["National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077715979","display_name":"Ao Jiang","orcid":"https://orcid.org/0000-0001-6227-4005"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Jiang","raw_affiliation_strings":["School of Computer Science, Wuhan University , Wuhan \u00a0430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University , Wuhan \u00a0430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101205130","display_name":"Ruijin Luo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruijin Luo","raw_affiliation_strings":["Shanghai Southgene Technology Co., Ltd. , Shanghai \u00a0201203, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Southgene Technology Co., Ltd. , Shanghai \u00a0201203, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101205131","display_name":"Qinwen He","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinwen He","raw_affiliation_strings":["National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017229676","display_name":"Anan Li","orcid":"https://orcid.org/0000-0002-5877-4813"},"institutions":[{"id":"https://openalex.org/I4210125878","display_name":"Suzhou Research Institute","ror":"https://ror.org/03ebk0c60","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210125878"]},{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I4210148486","display_name":"Jiangsu Industry Technology Research Institute","ror":"https://ror.org/044a9d018","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210148486"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Anan Li","raw_affiliation_strings":["Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology , Wuhan \u00a0430074, China","HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics , Suzhou \u00a0215123, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology , Wuhan \u00a0430074, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]},{"raw_affiliation_string":"HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics , Suzhou \u00a0215123, China","institution_ids":["https://openalex.org/I4210125878","https://openalex.org/I4210148486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100459043","display_name":"Yujie Chen","orcid":"https://orcid.org/0000-0002-9905-9138"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujie Chen","raw_affiliation_strings":["National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035499154","display_name":"Zoutao Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138186","display_name":"Wuhan National Laboratory for Optoelectronics","ror":"https://ror.org/03c9ncn37","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210138186"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zoutao Zhang","raw_affiliation_strings":["Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology , Wuhan \u00a0430074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology , Wuhan \u00a0430074, China","institution_ids":["https://openalex.org/I4210138186","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100415342","display_name":"Feng Liu","orcid":"https://orcid.org/0000-0003-3228-0943"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feng Liu","raw_affiliation_strings":["School of Computer Science, Wuhan University , Wuhan \u00a0430072, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University , Wuhan \u00a0430072, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090512","display_name":"Guangzhou Experimental Station","ror":"https://ror.org/00f2c2516","country_code":"CN","type":"facility","lineage":["https://openalex.org/I107851509","https://openalex.org/I4210090512","https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yixue Li","raw_affiliation_strings":["Guangzhou Laboratory , Guangzhou \u00a0510005, China","National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangzhou Laboratory , Guangzhou \u00a0510005, China","institution_ids":["https://openalex.org/I4210090512"]},{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100419052","display_name":"Guoqing Zhang","orcid":"https://orcid.org/0000-0001-8827-7546"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoqing Zhang","raw_affiliation_strings":["National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China"],"raw_orcid":"https://orcid.org/0000-0001-8827-7546","affiliations":[{"raw_affiliation_string":"National Genomics Data Center& Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Science , Shanghai \u00a0200031, China","institution_ids":["https://openalex.org/I4210096013","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5008280608","https://openalex.org/A5100415342"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I37461747","https://openalex.org/I4210090512","https://openalex.org/I4210096013"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.1139,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.91694563,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"51","issue":"W1","first_page":"W553","last_page":"W559"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.9415000081062317,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.9415000081062317,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9094434380531311},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45586255192756653}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9094434380531311},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45586255192756653}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad413","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad413/50417638/gkad413.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37216588","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37216588","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320082","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320082","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320082/pdf/gkad413.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad413","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad413/50417638/gkad413.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2883768802","display_name":null,"funder_award_id":"XDB38030100","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G3292149396","display_name":null,"funder_award_id":"81827901","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6261766095","display_name":null,"funder_award_id":"2018YFC2000205","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G644720725","display_name":null,"funder_award_id":"2018YFC2000205","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G7024528476","display_name":null,"funder_award_id":"2020YFC2005003","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7593847170","display_name":null,"funder_award_id":"2021YFF0703702","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8771894221","display_name":null,"funder_award_id":"2020YFC2005003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320326972","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4377289796.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1938796541","https://openalex.org/W2037582484","https://openalex.org/W2065509982","https://openalex.org/W2066771173","https://openalex.org/W2098342476","https://openalex.org/W2106893789","https://openalex.org/W2118691301","https://openalex.org/W2312055187","https://openalex.org/W2471536144","https://openalex.org/W2558551813","https://openalex.org/W2773247831","https://openalex.org/W2889453805","https://openalex.org/W2899224111","https://openalex.org/W2905058438","https://openalex.org/W2918540833","https://openalex.org/W2935706689","https://openalex.org/W2991741056","https://openalex.org/W2991860444","https://openalex.org/W2996171578","https://openalex.org/W2996858474","https://openalex.org/W3021105102","https://openalex.org/W3037329734","https://openalex.org/W3043793790","https://openalex.org/W3044030235","https://openalex.org/W3090542854","https://openalex.org/W3134482219","https://openalex.org/W3140496782","https://openalex.org/W3184426048","https://openalex.org/W3190202966","https://openalex.org/W3211114294","https://openalex.org/W3216586749","https://openalex.org/W4210444984","https://openalex.org/W4225285608","https://openalex.org/W4242111955","https://openalex.org/W4281716652","https://openalex.org/W4283382342","https://openalex.org/W4300862018","https://openalex.org/W4384816663","https://openalex.org/W4386923319","https://openalex.org/W6640660125","https://openalex.org/W6839134407","https://openalex.org/W6845303433"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Understanding":[0],"the":[1,27,63,69,76,172],"relationship":[2],"between":[3,175],"fine-scale":[4],"spatial":[5,16,21,145,176],"organization":[6],"and":[7,20,51,59,75,134,144,167,178],"biological":[8,179],"function":[9,180],"necessitates":[10],"a":[11,34,83,165],"tool":[12,163],"that":[13],"effectively":[14],"combines":[15],"positions,":[17],"morphological":[18,159],"information,":[19],"transcriptomics":[22],"(ST)":[23],"data.":[24,43],"We":[25],"introduce":[26],"Spatial":[28],"Multimodal":[29],"Data":[30],"Browser":[31],"(SMDB,":[32],"https://www.biosino.org/smdb),":[33],"robust":[35],"visualization":[36],"web":[37],"service":[38],"for":[39,116,156,170],"interactively":[40],"exploring":[41],"ST":[42,120],"By":[44],"integrating":[45],"multimodal":[46],"data,":[47],"such":[48],"as":[49,148],"hematoxylin":[50],"eosin":[52],"(H&E)":[53],"images,":[54],"gene":[55,79],"expression-based":[56],"molecular":[57,106],"clusters,":[58],"more,":[60],"SMDB":[61,88,138],"facilitates":[62],"analysis":[64],"of":[65,71,78,119],"tissue":[66],"composition":[67],"through":[68],"dissociation":[70],"two-dimensional":[72],"(2D)":[73],"sections":[74],"identification":[77],"expression-profiled":[80],"boundaries.":[81],"In":[82],"digital":[84],"three-dimensional":[85],"(3D)":[86],"space,":[87],"allows":[89],"researchers":[90],"to":[91],"reconstruct":[92],"morphology":[93],"visualizations":[94],"based":[95],"on":[96],"manually":[97],"filtered":[98],"spots":[99,121],"or":[100],"expand":[101],"anatomical":[102],"structures":[103],"using":[104],"high-resolution":[105],"subtypes.":[107],"To":[108],"enhance":[109],"user":[110],"experience,":[111],"it":[112,149],"offers":[113],"customizable":[114],"workspaces":[115],"interactive":[117],"exploration":[118],"in":[122,132,142,158,181],"tissues,":[123],"providing":[124],"features":[125],"like":[126],"smooth":[127],"zooming,":[128],"panning,":[129],"360-degree":[130],"rotation":[131],"3D":[133],"adjustable":[135],"spot":[136],"scaling.":[137],"is":[139],"particularly":[140],"valuable":[141],"neuroscience":[143],"histology":[146],"studies,":[147],"incorporates":[150],"Allen's":[151],"mouse":[152],"brain":[153],"anatomy":[154],"atlas":[155],"reference":[157],"research.":[160],"This":[161],"powerful":[162],"provides":[164],"comprehensive":[166],"efficient":[168],"solution":[169],"examining":[171],"intricate":[173],"relationships":[174],"morphology,":[177],"various":[182],"tissues.":[183]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
