{"id":"https://openalex.org/W4376132442","doi":"https://doi.org/10.1093/nar/gkad407","title":"MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data","display_name":"MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data","publication_year":2023,"publication_date":"2023-05-11","ids":{"openalex":"https://openalex.org/W4376132442","doi":"https://doi.org/10.1093/nar/gkad407","pmid":"https://pubmed.ncbi.nlm.nih.gov/37166960"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad407","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad407/50279482/gkad407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad407/50279482/gkad407.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085873420","display_name":"Yao L\u00fc","orcid":"https://orcid.org/0000-0002-0787-6449"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yao Lu","raw_affiliation_strings":["Department of Microbiology and Immunology, McGill University , Quebec , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110918844","display_name":"Guangyan Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Guangyan Zhou","raw_affiliation_strings":["Institute of Parasitology, McGill University , Quebec , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Parasitology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040084733","display_name":"Jessica Ewald","orcid":"https://orcid.org/0000-0002-7555-736X"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jessica Ewald","raw_affiliation_strings":["Institute of Parasitology, McGill University , Quebec , Canada"],"raw_orcid":"https://orcid.org/0000-0002-7555-736X","affiliations":[{"raw_affiliation_string":"Institute of Parasitology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073424887","display_name":"Zhiqiang Pang","orcid":"https://orcid.org/0000-0003-1654-7556"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zhiqiang Pang","raw_affiliation_strings":["Institute of Parasitology, McGill University , Quebec , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Parasitology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091923291","display_name":"Tanisha Jean Shiri","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Tanisha Shiri","raw_affiliation_strings":["Institute of Parasitology, McGill University , Quebec , Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Parasitology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073663029","display_name":"Jianguo Xia","orcid":"https://orcid.org/0000-0003-2040-2624"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jianguo Xia","raw_affiliation_strings":["Department of Animal Science, McGill University , Quebec , Canada","Department of Microbiology and Immunology, McGill University , Quebec , Canada","Institute of Parasitology, McGill University , Quebec , Canada"],"raw_orcid":"https://orcid.org/0000-0003-2040-2624","affiliations":[{"raw_affiliation_string":"Department of Animal Science, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Institute of Parasitology, McGill University , Quebec , Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5073663029"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":56.8242,"has_fulltext":true,"cited_by_count":616,"citation_normalized_percentile":{"value":0.99958775,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"W1","first_page":"W310","last_page":"W318"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6872060298919678},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.6744507551193237},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5826199650764465},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5720771551132202},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5531682372093201},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49425816535949707},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.44530385732650757},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.4438224136829376},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4182981848716736},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38348639011383057},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36170464754104614},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.3226391673088074}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6872060298919678},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6744507551193237},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5826199650764465},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5720771551132202},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5531682372093201},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49425816535949707},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.44530385732650757},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.4438224136829376},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4182981848716736},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38348639011383057},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36170464754104614},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.3226391673088074},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008828","descriptor_name":"Microbiological Techniques","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad407","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad407/50279482/gkad407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37166960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37166960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320150","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320150","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320150/pdf/gkad407.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad407","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad407/50279482/gkad407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4376132442.pdf"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1488156261","https://openalex.org/W2001295992","https://openalex.org/W2025944550","https://openalex.org/W2034285706","https://openalex.org/W2037338351","https://openalex.org/W2084590843","https://openalex.org/W2108718991","https://openalex.org/W2118069309","https://openalex.org/W2146512944","https://openalex.org/W2147637673","https://openalex.org/W2151350595","https://openalex.org/W2154026962","https://openalex.org/W2163903604","https://openalex.org/W2190655222","https://openalex.org/W2401404581","https://openalex.org/W2592244930","https://openalex.org/W2592367925","https://openalex.org/W2608515760","https://openalex.org/W2762425175","https://openalex.org/W2768511889","https://openalex.org/W2791681873","https://openalex.org/W2797413896","https://openalex.org/W2802817419","https://openalex.org/W2807893746","https://openalex.org/W2904155504","https://openalex.org/W2909472027","https://openalex.org/W2947189704","https://openalex.org/W2948018512","https://openalex.org/W2954681652","https://openalex.org/W2958564218","https://openalex.org/W2963276645","https://openalex.org/W2967163687","https://openalex.org/W2978355872","https://openalex.org/W2985897872","https://openalex.org/W2987653794","https://openalex.org/W2999175750","https://openalex.org/W3026279730","https://openalex.org/W3030441098","https://openalex.org/W3031621681","https://openalex.org/W3091863163","https://openalex.org/W3094760686","https://openalex.org/W3103827447","https://openalex.org/W3123817721","https://openalex.org/W3183477416","https://openalex.org/W3211779138","https://openalex.org/W3214361435","https://openalex.org/W4200044848","https://openalex.org/W4200157043","https://openalex.org/W4205364647","https://openalex.org/W4206806868","https://openalex.org/W4210506197","https://openalex.org/W4214843661","https://openalex.org/W4286510420","https://openalex.org/W4289524025","https://openalex.org/W4292731230","https://openalex.org/W4300863449","https://openalex.org/W4304116809","https://openalex.org/W4304117487","https://openalex.org/W4307291327","https://openalex.org/W4310957810","https://openalex.org/W6769649089","https://openalex.org/W6805057803"],"related_works":["https://openalex.org/W1968369492","https://openalex.org/W2043102924","https://openalex.org/W2995607319","https://openalex.org/W2391004329","https://openalex.org/W2315403509","https://openalex.org/W2624135745","https://openalex.org/W2591857450","https://openalex.org/W1542636957","https://openalex.org/W2467097829","https://openalex.org/W2346132586"],"abstract_inverted_index":{"Microbiome":[0,105],"studies":[1],"have":[2],"become":[3],"routine":[4],"in":[5],"biomedical,":[6],"agricultural":[7],"and":[8,19,40,55,87,116,125,128,155,167,170],"environmental":[9],"sciences":[10],"with":[11,93],"diverse":[12],"aims,":[13],"including":[14],"diversity":[15],"profiling,":[16],"functional":[17,53,165],"characterization,":[18],"translational":[20],"applications.":[21],"The":[22],"resulting":[23],"complex,":[24],"often":[25],"multi-omics":[26,187],"datasets":[27,141],"demand":[28],"powerful,":[29],"yet":[30],"user-friendly":[31],"bioinformatics":[32],"tools":[33],"to":[34,48,67,109,134],"reveal":[35],"key":[36],"patterns,":[37],"important":[38,146],"biomarkers,":[39],"potential":[41],"activities.":[42],"Here":[43],"we":[44],"introduce":[45],"MicrobiomeAnalyst":[46,71,196],"2.0":[47,72,197],"support":[49,150],"comprehensive":[50],"statistics,":[51],"visualization,":[52],"interpretation,":[54],"integrative":[56],"analysis":[57,121,154],"of":[58,122],"data":[59,85],"outputs":[60],"commonly":[61],"generated":[62],"from":[63,189],"microbiome":[64,124],"studies.":[65,144],"Compared":[66],"the":[68,94,177],"previous":[69],"version,":[70],"features":[73,182],"three":[74],"new":[75,181],"modules:":[76],"(i)":[77],"a":[78,104,130,186,190],"Raw":[79],"Data":[80,96],"Processing":[81],"module":[82,98,108,133],"for":[83,99,151,158,164],"amplicon":[84],"processing":[86],"taxonomy":[88],"annotation":[89],"that":[90],"connects":[91],"directly":[92],"Marker":[95],"Profiling":[97,107],"downstream":[100],"statistical":[101],"analysis;":[102],"(ii)":[103],"Metabolomics":[106],"help":[110,135],"dissect":[111],"associations":[112],"between":[113],"community":[114],"compositions":[115],"metabolic":[117],"activities":[118],"through":[119],"joint":[120],"paired":[123],"metabolomics":[126],"datasets;":[127],"(iii)":[129],"Statistical":[131],"Meta-Analysis":[132],"identify":[136],"consistent":[137],"signatures":[138],"by":[139],"integrating":[140],"across":[142],"multiple":[143],"Other":[145],"improvements":[147],"include":[148],"added":[149],"multi-factor":[152],"differential":[153],"interactive":[156],"visualizations":[157],"popular":[159],"graphical":[160],"outputs,":[161],"updated":[162],"methods":[163],"prediction":[166],"correlation":[168],"analysis,":[169],"expanded":[171],"taxon":[172],"set":[173],"libraries":[174],"based":[175],"on":[176],"latest":[178],"literature.":[179],"These":[180],"are":[183],"demonstrated":[184],"using":[185],"dataset":[188],"recent":[191],"type":[192],"1":[193],"diabetes":[194],"study.":[195],"is":[198],"freely":[199],"available":[200],"at":[201],"microbiomeanalyst.ca.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":173},{"year":2025,"cited_by_count":233},{"year":2024,"cited_by_count":177},{"year":2023,"cited_by_count":33}],"updated_date":"2026-08-12T07:12:00.856984","created_date":"2025-10-10T00:00:00"}