{"id":"https://openalex.org/W4375954646","doi":"https://doi.org/10.1093/nar/gkad383","title":"GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins","display_name":"GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins","publication_year":2023,"publication_date":"2023-05-09","ids":{"openalex":"https://openalex.org/W4375954646","doi":"https://doi.org/10.1093/nar/gkad383","pmid":"https://pubmed.ncbi.nlm.nih.gov/37158278"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad383","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad383/50252292/gkad383.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad383/50252292/gkad383.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100700410","display_name":"Miaomiao Chen","orcid":"https://orcid.org/0000-0002-4866-8072"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Miaomiao Chen","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043782446","display_name":"Weizhi Zhang","orcid":"https://orcid.org/0000-0002-9131-3234"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weizhi Zhang","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046910965","display_name":"Yujie Gou","orcid":"https://orcid.org/0000-0002-5399-9757"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujie Gou","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100568385","display_name":"Danyang Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danyang Xu","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058312928","display_name":"Yuxiang Wei","orcid":"https://orcid.org/0000-0002-4391-3753"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxiang Wei","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100326845","display_name":"Dan Liu","orcid":"https://orcid.org/0000-0002-4704-9798"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Liu","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083819240","display_name":"Han Cheng","orcid":"https://orcid.org/0000-0002-6684-317X"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Han","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031334632","display_name":"Xinhe Huang","orcid":"https://orcid.org/0000-0003-4190-0737"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinhe Huang","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102010141","display_name":"Chengzhi Li","orcid":"https://orcid.org/0000-0002-2373-5638"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengzhi Li","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078920713","display_name":"Wanshan Ning","orcid":"https://orcid.org/0000-0002-1410-7891"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanshan Ning","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019144745","display_name":"Di Peng","orcid":"https://orcid.org/0000-0002-1249-3741"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Di Peng","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052691524","display_name":"Yu Xue","orcid":"https://orcid.org/0000-0002-9403-6869"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]},{"id":"https://openalex.org/I881766915","display_name":"Nanjing University","ror":"https://ror.org/01rxvg760","country_code":"CN","type":"education","lineage":["https://openalex.org/I881766915"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Xue","raw_affiliation_strings":["Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","Nanjing University Institute of Artificial Intelligence Biomedicine , Nanjing 210031 , China"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Key Laboratory of Molecular Biophysics of Ministry of Education, Hubei Bioinformatics and Molecular Imaging Key Laboratory, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , Hubei 430074 , China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Nanjing University Institute of Artificial Intelligence Biomedicine , Nanjing 210031 , China","institution_ids":["https://openalex.org/I881766915"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5100700410"],"corresponding_institution_ids":["https://openalex.org/I47720641"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":16.4066,"has_fulltext":true,"cited_by_count":109,"citation_normalized_percentile":{"value":0.99481313,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"51","issue":"W1","first_page":"W243","last_page":"W250"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7044349908828735},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.6578220129013062},{"id":"https://openalex.org/keywords/global-positioning-system","display_name":"Global Positioning System","score":0.5805090665817261},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.48283252120018005},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4768717885017395},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3868136703968048},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3049968481063843},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20582199096679688}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7044349908828735},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.6578220129013062},{"id":"https://openalex.org/C60229501","wikidata":"https://www.wikidata.org/wiki/Q18822","display_name":"Global Positioning System","level":2,"score":0.5805090665817261},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.48283252120018005},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4768717885017395},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3868136703968048},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3049968481063843},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20582199096679688},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad383","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad383/50252292/gkad383.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37158278","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37158278","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320111","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320111","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320111/pdf/gkad383.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad383","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad383/50252292/gkad383.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1063086538","display_name":null,"funder_award_id":"31970633","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2479366607","display_name":null,"funder_award_id":"31930021","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2530745827","display_name":null,"funder_award_id":"2021ZD0201300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3109765444","display_name":null,"funder_award_id":"2022YFC2704300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5007863287","display_name":null,"funder_award_id":"2021ZD0201300","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7174558747","display_name":null,"funder_award_id":"Group","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7844885592","display_name":null,"funder_award_id":"81701567","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G798236531","display_name":null,"funder_award_id":"2021YFF0702000","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4375954646.pdf"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1975092906","https://openalex.org/W1995989434","https://openalex.org/W1996310767","https://openalex.org/W2005750609","https://openalex.org/W2015312864","https://openalex.org/W2026086206","https://openalex.org/W2030205108","https://openalex.org/W2031028006","https://openalex.org/W2043274355","https://openalex.org/W2070732456","https://openalex.org/W2073090360","https://openalex.org/W2079568341","https://openalex.org/W2085037886","https://openalex.org/W2099686283","https://openalex.org/W2100984467","https://openalex.org/W2104244040","https://openalex.org/W2132832607","https://openalex.org/W2137852592","https://openalex.org/W2140047797","https://openalex.org/W2147054306","https://openalex.org/W2147207778","https://openalex.org/W2156407548","https://openalex.org/W2156916536","https://openalex.org/W2158266834","https://openalex.org/W2165923048","https://openalex.org/W2170747616","https://openalex.org/W2234248432","https://openalex.org/W2494960642","https://openalex.org/W2742750032","https://openalex.org/W2765643657","https://openalex.org/W2768348081","https://openalex.org/W2800516331","https://openalex.org/W2898909792","https://openalex.org/W2906052106","https://openalex.org/W3004392625","https://openalex.org/W3009760307","https://openalex.org/W3011725683","https://openalex.org/W3020440546","https://openalex.org/W3087639767","https://openalex.org/W3134163647","https://openalex.org/W3157056566","https://openalex.org/W3170619786","https://openalex.org/W3210206897","https://openalex.org/W3217481038","https://openalex.org/W4200469626","https://openalex.org/W4283269902","https://openalex.org/W4283754853","https://openalex.org/W6745609711"],"related_works":["https://openalex.org/W3162200841","https://openalex.org/W2586280620","https://openalex.org/W2805505483","https://openalex.org/W2334071950","https://openalex.org/W2384744344","https://openalex.org/W2051108283","https://openalex.org/W1964515703","https://openalex.org/W4362623556","https://openalex.org/W4362610326","https://openalex.org/W1978425204"],"abstract_inverted_index":{"Protein":[0],"phosphorylation,":[1],"catalyzed":[2],"by":[3],"protein":[4],"kinases":[5],"(PKs),":[6],"is":[7,163],"one":[8],"of":[9,22,38,98,182],"the":[10,86,110,127,133,141,145],"most":[11],"important":[12],"post-translational":[13],"modifications":[14],"(PTMs),":[15],"and":[16,60,89,152,156],"involved":[17],"in":[18,43,71,105,123,154],"regulating":[19],"almost":[20],"all":[21],"biological":[23],"processes.":[24],"Here,":[25],"we":[26,46,130],"report":[27],"an":[28],"updated":[29],"server,":[30],"Group-based":[31],"Prediction":[32],"System":[33],"(GPS)":[34],"6.0,":[35],"for":[36,120,179],"prediction":[37,142],"PK-specific":[39,83,118],"phosphorylation":[40],"sites":[41],"(p-sites)":[42],"eukaryotes.":[44],"First,":[45],"pre-trained":[47],"a":[48,94,175],"general":[49],"model":[50],"using":[51,93],"penalized":[52],"logistic":[53],"regression":[54],"(PLR),":[55],"deep":[56],"neural":[57],"network":[58],"(DNN),":[59],"Light":[61],"Gradient":[62],"Boosting":[63],"Machine":[64],"(LightGMB)":[65],"on":[66],"490":[67],"762":[68],"non-redundant":[69],"p-sites":[70,119,153],"71":[72],"407":[73],"proteins.":[74,107],"Then,":[75],"transfer":[76],"learning":[77],"was":[78],"conducted":[79],"to":[80,139],"obtain":[81],"577":[82],"predictors":[84],"at":[85,166],"group,":[87],"family":[88],"single":[90],"PK":[91],"levels,":[92],"well-curated":[95],"data":[96],"set":[97],"30":[99],"043":[100],"known":[101],"site-specific":[102],"kinase-substrate":[103],"relations":[104],"7041":[106],"Together":[108],"with":[109],"evolutionary":[111],"information,":[112],"GPS":[113,160,171],"6.0":[114,161,172],"could":[115,173],"hierarchically":[116],"predict":[117],"44046":[121],"PKs":[122],"185":[124],"species.":[125],"Besides":[126],"basic":[128],"statistics,":[129],"also":[131],"offered":[132],"knowledge":[134],"from":[135],"22":[136],"public":[137],"resources":[138],"annotate":[140],"results,":[143],"including":[144],"experimental":[146],"evidence,":[147],"physical":[148],"interactions,":[149],"sequence":[150],"logos,":[151],"sequences":[155],"3D":[157],"structures.":[158],"The":[159],"server":[162],"freely":[164],"available":[165],"https://gps.biocuckoo.cn.":[167],"We":[168],"believe":[169],"that":[170],"be":[174],"highly":[176],"useful":[177],"service":[178],"further":[180],"analysis":[181],"phosphorylation.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":48},{"year":2024,"cited_by_count":39},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
