{"id":"https://openalex.org/W4375955383","doi":"https://doi.org/10.1093/nar/gkad381","title":"IRSOM2: a web server for predicting bifunctional RNAs","display_name":"IRSOM2: a web server for predicting bifunctional RNAs","publication_year":2023,"publication_date":"2023-05-09","ids":{"openalex":"https://openalex.org/W4375955383","doi":"https://doi.org/10.1093/nar/gkad381","pmid":"https://pubmed.ncbi.nlm.nih.gov/37158254"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad381","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad381","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad381/50252167/gkad381.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad381/50252167/gkad381.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055433325","display_name":"Guillaume Postic","orcid":"https://orcid.org/0000-0002-0380-0092"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Postic","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France"],"raw_orcid":"https://orcid.org/0000-0002-0380-0092","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067320842","display_name":"Christophe Tav","orcid":"https://orcid.org/0000-0001-8808-9617"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Tav","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082766725","display_name":"Ludovic Platon","orcid":null},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ludovic Platon","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062973640","display_name":"Farida Zehraoui","orcid":"https://orcid.org/0000-0001-6278-1680"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Farida Zehraoui","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091493314","display_name":"Fariza Tahi","orcid":"https://orcid.org/0000-0002-3975-5668"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fariza Tahi","raw_affiliation_strings":["Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris-Saclay, Univ Evry, IBISC , 91020 , Evry-Courcouronnes , France","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091493314"],"corresponding_institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":0.7635,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.67955393,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"51","issue":"W1","first_page":"W281","last_page":"W288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6618844270706177},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5689994096755981},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5484222173690796},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5402711033821106},{"id":"https://openalex.org/keywords/bifunctional","display_name":"Bifunctional","score":0.529877781867981},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4949788451194763},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.486887127161026},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4678759276866913},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.4429967403411865},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4238755702972412},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32280048727989197},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3086066246032715},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1840609312057495},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1602538526058197},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10524848103523254}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6618844270706177},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5689994096755981},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5484222173690796},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5402711033821106},{"id":"https://openalex.org/C2780443040","wikidata":"https://www.wikidata.org/wiki/Q3737863","display_name":"Bifunctional","level":3,"score":0.529877781867981},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4949788451194763},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.486887127161026},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4678759276866913},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.4429967403411865},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4238755702972412},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32280048727989197},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3086066246032715},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1840609312057495},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1602538526058197},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10524848103523254},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C161790260","wikidata":"https://www.wikidata.org/wiki/Q82264","display_name":"Catalysis","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkad381","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad381","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad381/50252167/gkad381.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37158254","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37158254","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10320184","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320184","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320184/pdf/gkad381.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04164000v1","is_oa":false,"landing_page_url":"https://hal.science/hal-04164000","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2023, 51 (W1), pp.W281-W288. ⟨10.1093/nar/gkad381⟩","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad381","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad381","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad381/50252167/gkad381.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320324252","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4375955383.pdf","grobid_xml":"https://content.openalex.org/works/W4375955383.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1991679818","https://openalex.org/W1998422171","https://openalex.org/W2048194168","https://openalex.org/W2061548680","https://openalex.org/W2071849521","https://openalex.org/W2081090039","https://openalex.org/W2108410631","https://openalex.org/W2205343347","https://openalex.org/W2346784659","https://openalex.org/W2530008209","https://openalex.org/W2615786037","https://openalex.org/W2796250155","https://openalex.org/W2891303359","https://openalex.org/W2914698725","https://openalex.org/W2947017644","https://openalex.org/W2971297443","https://openalex.org/W2979506092","https://openalex.org/W3006194842","https://openalex.org/W3008578565","https://openalex.org/W3088693971","https://openalex.org/W3090569323","https://openalex.org/W3095583226","https://openalex.org/W3095979265","https://openalex.org/W3102734422","https://openalex.org/W3202397671","https://openalex.org/W3204639565","https://openalex.org/W4206276702","https://openalex.org/W4206990652","https://openalex.org/W4281483996"],"related_works":["https://openalex.org/W2298517926","https://openalex.org/W2971531865","https://openalex.org/W3086088872","https://openalex.org/W2921307297","https://openalex.org/W2802108216","https://openalex.org/W2954286598","https://openalex.org/W2094292925","https://openalex.org/W4313402066","https://openalex.org/W2805484539","https://openalex.org/W4220987767"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"have":[2,17],"shown":[3],"that":[4,16,134],"some":[5],"biologically":[6],"active":[7],"non-coding":[8,47,139],"RNAs":[9,69,133],"(ncRNAs)":[10],"are":[11],"actually":[12],"translated":[13],"into":[14],"polypeptides":[15],"a":[18,61,71,97,127],"physiological":[19],"function":[20],"as":[21,60,70,160],"well.":[22],"This":[23],"paradigm":[24],"shift":[25],"requires":[26],"adapted":[27],"computational":[28],"methods":[29],"to":[30,45,66,87,100,109,117],"predict":[31],"this":[32],"new":[33,128],"class":[34],"of":[35,58,73,93,120,130,156,167],"'bifunctional":[36],"RNAs'.":[37],"Previously,":[38],"we":[39,52],"developed":[40],"IRSOM,":[41],"an":[42],"open-source":[43],"algorithm":[44],"classify":[46],"and":[48,108,111,138,162],"coding":[49],"RNAs.":[50],"Here,":[51],"use":[53],"the":[54,74,102,113,118,177],"binary":[55],"statistical":[56],"model":[57,103],"IRSOM":[59],"ternary":[62],"classifier,":[63],"called":[64],"IRSOM2,":[65],"identify":[67],"bifunctional":[68,152],"rejection":[72],"two":[75],"other":[76],"classes.":[77],"We":[78,124],"present":[79],"its":[80],"easy-to-use":[81],"web":[82,171],"interface,":[83],"which":[84],"allows":[85],"users":[86],"perform":[88],"predictions":[89],"on":[90,176],"large":[91],"datasets":[92],"RNA":[94],"sequences":[95],"in":[96,141,149],"short":[98],"time,":[99],"re-train":[101],"with":[104],"their":[105],"own":[106],"data,":[107],"visualize":[110],"analyze":[112],"classification":[114],"results":[115],"thanks":[116],"implementation":[119],"self-organizing":[121],"maps":[122],"(SOM).":[123],"also":[125],"propose":[126],"benchmark":[129],"experimentally":[131],"validated":[132],"play":[135],"both":[136],"protein-coding":[137],"roles,":[140],"different":[142,157],"organisms.":[143],"Thus,":[144],"IRSOM2":[145],"showed":[146],"promising":[147],"performance":[148],"detecting":[150],"these":[151],"transcripts":[153],"among":[154],"ncRNAs":[155],"types,":[158],"such":[159],"circRNAs":[161],"lncRNAs":[163],"(in":[164],"particular":[165],"those":[166],"shorter":[168],"lengths).":[169],"The":[170],"server":[172],"is":[173],"freely":[174],"available":[175],"EvryRNA":[178],"platform:":[179],"https://evryrna.ibisc.univ-evry.fr.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}