{"id":"https://openalex.org/W4375954697","doi":"https://doi.org/10.1093/nar/gkad337","title":"vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis","display_name":"vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis","publication_year":2023,"publication_date":"2023-05-09","ids":{"openalex":"https://openalex.org/W4375954697","doi":"https://doi.org/10.1093/nar/gkad337","pmid":"https://pubmed.ncbi.nlm.nih.gov/37158226"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad337","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad337/50252198/gkad337.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad337/50252198/gkad337.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038054571","display_name":"Ahmed Mohamed","orcid":"https://orcid.org/0000-0001-6507-5300"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ahmed Mohamed","raw_affiliation_strings":["Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Colonial Foundation Healthy Ageing Centre, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia"],"raw_orcid":"https://orcid.org/0000-0001-6507-5300","affiliations":[{"raw_affiliation_string":"Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Colonial Foundation Healthy Ageing Centre, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007306514","display_name":"Dharmesh D. Bhuva","orcid":"https://orcid.org/0000-0002-6398-9157"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I5681781","display_name":"The University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dharmesh D Bhuva","raw_affiliation_strings":["Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","South Australian immunoGENomics Cancer Institute (SAiGENCI), Faculty of Health and Medical Sciences, The University of Adelaide , Adelaide , SA 5005, Australia"],"raw_orcid":"https://orcid.org/0000-0002-6398-9157","affiliations":[{"raw_affiliation_string":"Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"South Australian immunoGENomics Cancer Institute (SAiGENCI), Faculty of Health and Medical Sciences, The University of Adelaide , Adelaide , SA 5005, Australia","institution_ids":["https://openalex.org/I5681781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087978393","display_name":"Sam Lee","orcid":"https://orcid.org/0000-0002-6805-4051"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sam Lee","raw_affiliation_strings":["Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432410","display_name":"Ning Liu","orcid":"https://orcid.org/0000-0002-9487-9305"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I5681781","display_name":"The University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ning Liu","raw_affiliation_strings":["Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","South Australian immunoGENomics Cancer Institute (SAiGENCI), Faculty of Health and Medical Sciences, The University of Adelaide , Adelaide , SA 5005, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"South Australian immunoGENomics Cancer Institute (SAiGENCI), Faculty of Health and Medical Sciences, The University of Adelaide , Adelaide , SA 5005, Australia","institution_ids":["https://openalex.org/I5681781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088957393","display_name":"Chin Wee Tan","orcid":"https://orcid.org/0000-0001-9695-7218"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Chin\u00a0Wee Tan","raw_affiliation_strings":["Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","Frazer Institute, Faculty of Medicine, The University of Queensland , Brisbane ,\u00a0 QLD 4102, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Frazer Institute, Faculty of Medicine, The University of Queensland , Brisbane ,\u00a0 QLD 4102, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018252802","display_name":"Melissa J. Davis","orcid":"https://orcid.org/0000-0003-4864-7033"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I5681781","display_name":"The University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Melissa J Davis","raw_affiliation_strings":["Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","Department of Clinical Pathology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","Frazer Institute, Faculty of Medicine, The University of Queensland , Brisbane ,\u00a0 QLD 4102, Australia","South Australian immunoGENomics Cancer Institute (SAiGENCI), Faculty of Health and Medical Sciences, The University of Adelaide , Adelaide , SA 5005, Australia","Department of Clinical Pathology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Parkville, VIC 3010, Australia"],"raw_orcid":"https://orcid.org/0000-0003-4864-7033","affiliations":[{"raw_affiliation_string":"Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research , Melbourne , VIC 3052, Australia","institution_ids":["https://openalex.org/I196021976"]},{"raw_affiliation_string":"Department of Clinical Pathology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne , Parkville , VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]},{"raw_affiliation_string":"Frazer Institute, Faculty of Medicine, The University of Queensland , Brisbane ,\u00a0 QLD 4102, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"South Australian immunoGENomics Cancer Institute (SAiGENCI), Faculty of Health and Medical Sciences, The University of Adelaide , Adelaide , SA 5005, Australia","institution_ids":["https://openalex.org/I5681781"]},{"raw_affiliation_string":"Department of Clinical Pathology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Parkville, VIC 3010, Australia","institution_ids":["https://openalex.org/I165779595"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5018252802"],"corresponding_institution_ids":["https://openalex.org/I165143802","https://openalex.org/I165779595","https://openalex.org/I196021976","https://openalex.org/I5681781"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6998,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.84013208,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"51","issue":"W1","first_page":"W593","last_page":"W600"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7593566179275513},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7471287250518799},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6620043516159058},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6240118741989136},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5378175973892212},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5087335705757141},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.48560184240341187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4483802914619446},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4313383102416992},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2944512963294983},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.20042893290519714},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.188809335231781},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10686615109443665}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7593566179275513},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7471287250518799},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6620043516159058},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6240118741989136},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5378175973892212},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5087335705757141},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.48560184240341187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4483802914619446},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4313383102416992},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2944512963294983},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.20042893290519714},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.188809335231781},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10686615109443665},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad337","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad337/50252198/gkad337.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37158226","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37158226","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320187","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320187","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320187/pdf/gkad337.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad337","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad337/50252198/gkad337.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4442284976","display_name":null,"funder_award_id":"CBCNBCF-19-009","funder_id":"https://openalex.org/F4320320438","funder_display_name":"National Breast Cancer Foundation"},{"id":"https://openalex.org/G4567582942","display_name":null,"funder_award_id":"CBCNBCF-19-009","funder_id":"https://openalex.org/F4320324006","funder_display_name":"Cure Brain Cancer Foundation"}],"funders":[{"id":"https://openalex.org/F4320320438","display_name":"National Breast Cancer Foundation","ror":"https://ror.org/0120ky124"},{"id":"https://openalex.org/F4320322858","display_name":"State Government of Victoria","ror":"https://ror.org/02xvc5r05"},{"id":"https://openalex.org/F4320324006","display_name":"Cure Brain Cancer Foundation","ror":"https://ror.org/02db9yt31"},{"id":"https://openalex.org/F4320331131","display_name":"Australian Research Data Commons","ror":null},{"id":"https://openalex.org/F4320334707","display_name":"Cancer Council Victoria","ror":"https://ror.org/023m51b03"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4375954697.pdf"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W1969353942","https://openalex.org/W2043764521","https://openalex.org/W2097948046","https://openalex.org/W2100980426","https://openalex.org/W2103017472","https://openalex.org/W2124649657","https://openalex.org/W2130410032","https://openalex.org/W2133465414","https://openalex.org/W2146512944","https://openalex.org/W2148139839","https://openalex.org/W2158217645","https://openalex.org/W2159482845","https://openalex.org/W2187089797","https://openalex.org/W2214074259","https://openalex.org/W2343956310","https://openalex.org/W2345356016","https://openalex.org/W2466314544","https://openalex.org/W2516455020","https://openalex.org/W2540833380","https://openalex.org/W2544360569","https://openalex.org/W2616922646","https://openalex.org/W2786672974","https://openalex.org/W2900032527","https://openalex.org/W2917101543","https://openalex.org/W2928665623","https://openalex.org/W2944545583","https://openalex.org/W2946173685","https://openalex.org/W2951158909","https://openalex.org/W2961304458","https://openalex.org/W2989807288","https://openalex.org/W2991106430","https://openalex.org/W3037659634","https://openalex.org/W3090990034","https://openalex.org/W3092495933","https://openalex.org/W3099862724","https://openalex.org/W3112600195","https://openalex.org/W3175752499","https://openalex.org/W3201618068","https://openalex.org/W3211402536","https://openalex.org/W4241872665","https://openalex.org/W4294216483","https://openalex.org/W4302362633","https://openalex.org/W4303438684","https://openalex.org/W4323076296","https://openalex.org/W4324344884","https://openalex.org/W4389938094","https://openalex.org/W4391654308","https://openalex.org/W4394927236","https://openalex.org/W6719957963","https://openalex.org/W6728888212","https://openalex.org/W6748816842","https://openalex.org/W6785161123","https://openalex.org/W6797786779","https://openalex.org/W6809737803"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2542318691","https://openalex.org/W2547096368","https://openalex.org/W2586219255"],"abstract_inverted_index":{"Gene-set":[0],"analysis":[1,137,144,166],"(GSA)":[2],"dominates":[3],"the":[4,159,173,183],"functional":[5],"interpretation":[6],"of":[7,20,31,40,71,138,145,167,180],"omics":[8,150],"data":[9,90],"and":[10,37,68,95,111,148,154,186],"downstream":[11],"hypothesis":[12,45],"generation.":[13],"Despite":[14],"its":[15],"ability":[16],"to":[17,43,124,162],"summarise":[18,125],"thousands":[19],"measurements":[21],"into":[22],"semantically":[23],"interpretable":[24],"components,":[25],"GSA":[26,41,72,126],"often":[27],"results":[28,42,127,174,181],"in":[29],"hundreds":[30],"significantly":[32],"enriched":[33],"gene-sets.":[34],"However,":[35],"summarisation":[36,110],"effective":[38],"visualisation":[39],"facilitate":[44],"generation":[46],"is":[47,58,190],"still":[48,59],"lacking.":[49],"While":[50],"some":[51],"webservers":[52,77],"provide":[53,85,163],"gene-set":[54,106,109,165],"visualization":[55],"tools,":[56],"there":[57],"a":[60,102],"need":[61],"for":[62,88,104],"tools":[63],"that":[64],"can":[65],"effectively":[66],"summarize":[67],"guide":[69],"exploration":[70],"results.":[73],"To":[74],"enable":[75],"versatility,":[76],"accept":[78],"gene":[79,139],"lists":[80],"as":[81,93,141],"input,":[82],"however,":[83],"none":[84],"end-to-end":[86,105,164],"solutions":[87],"emerging":[89],"types":[91],"such":[92],"single-cell":[94,147],"spatial":[96,149,170],"omics.":[97],"Here,":[98],"we":[99],"present":[100],"vissE.Cloud,":[101],"webserver":[103,161],"analysis,":[107],"offering":[108],"highly":[112],"interactive":[113,178],"visualisation.":[114],"vissE.Cloud":[115,158,189],"uses":[116],"algorithms":[117],"from":[118],"our":[119],"earlier":[120],"R":[121],"package":[122],"vissE":[123],"by":[128,135],"identifying":[129],"biological":[130],"themes.":[131],"We":[132],"maintain":[133],"versatility":[134],"allowing":[136],"lists,":[140],"well":[142],"as,":[143],"raw":[146],"data,":[151,156],"including":[152],"CosMx":[153],"Xenium":[155],"making":[157],"first":[160],"sub-cellular":[168],"localised":[169],"data.":[171],"Structuring":[172],"hierarchically":[175],"allows":[176],"swift":[177],"investigations":[179],"at":[182,193],"gene,":[184],"gene-set,":[185],"clusters":[187],"level.":[188],"freely":[191],"available":[192],"https://www.vissE.Cloud.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
