{"id":"https://openalex.org/W4368357625","doi":"https://doi.org/10.1093/nar/gkad330","title":"DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction","display_name":"DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction","publication_year":2023,"publication_date":"2023-05-04","ids":{"openalex":"https://openalex.org/W4368357625","doi":"https://doi.org/10.1093/nar/gkad330","pmid":"https://pubmed.ncbi.nlm.nih.gov/37140058"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad330","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad330/50195693/gkad330.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad330/50195693/gkad330.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052646030","display_name":"Sushmita Basu","orcid":"https://orcid.org/0000-0002-9182-1191"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sushmita Basu","raw_affiliation_strings":["Department of Computer Science, Virginia Commonwealth University , Richmond , VA \u00a023284, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Commonwealth University , Richmond , VA \u00a023284, USA","institution_ids":["https://openalex.org/I184840846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011423412","display_name":"J\u00f6rg Gsponer","orcid":"https://orcid.org/0000-0003-3672-6594"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J\u00f6rg Gsponer","raw_affiliation_strings":["Michael Smith Laboratories, University of British Columbia , Vancouver , British Columbia , Canada"],"raw_orcid":"https://orcid.org/0000-0003-3672-6594","affiliations":[{"raw_affiliation_string":"Michael Smith Laboratories, University of British Columbia , Vancouver , British Columbia , Canada","institution_ids":["https://openalex.org/I4210133112","https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088423732","display_name":"Lukasz Kurgan","orcid":"https://orcid.org/0000-0002-7749-0314"},"institutions":[{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukasz Kurgan","raw_affiliation_strings":["Department of Computer Science, Virginia Commonwealth University , Richmond , VA \u00a023284, USA"],"raw_orcid":"https://orcid.org/0000-0002-7749-0314","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Commonwealth University , Richmond , VA \u00a023284, USA","institution_ids":["https://openalex.org/I184840846"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052646030"],"corresponding_institution_ids":["https://openalex.org/I184840846"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.3484,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.94835343,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"51","issue":"W1","first_page":"W141","last_page":"W147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9210011959075928},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5352402925491333},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43236297369003296},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2922876477241516}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9210011959075928},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5352402925491333},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43236297369003296},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2922876477241516}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad330","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad330/50195693/gkad330.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37140058","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37140058","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320100","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320100","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320100/pdf/gkad330.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad330","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad330/50195693/gkad330.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1807419058","display_name":null,"funder_award_id":"DBI2146027","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6995904377","display_name":null,"funder_award_id":"IIS2125218","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4368357625.pdf"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1554017431","https://openalex.org/W1901968134","https://openalex.org/W1963866642","https://openalex.org/W1964555160","https://openalex.org/W1989511016","https://openalex.org/W2008332643","https://openalex.org/W2021284648","https://openalex.org/W2034447651","https://openalex.org/W2055226297","https://openalex.org/W2060592742","https://openalex.org/W2065634898","https://openalex.org/W2065692451","https://openalex.org/W2086189298","https://openalex.org/W2110128290","https://openalex.org/W2113019206","https://openalex.org/W2120167569","https://openalex.org/W2126099124","https://openalex.org/W2144252381","https://openalex.org/W2167061681","https://openalex.org/W2170563234","https://openalex.org/W2178290447","https://openalex.org/W2366093519","https://openalex.org/W2420922808","https://openalex.org/W2510934692","https://openalex.org/W2545255051","https://openalex.org/W2553996574","https://openalex.org/W2562860543","https://openalex.org/W2621442802","https://openalex.org/W2735792968","https://openalex.org/W2762448613","https://openalex.org/W2796408051","https://openalex.org/W2806884808","https://openalex.org/W2810428068","https://openalex.org/W2900078410","https://openalex.org/W2918011059","https://openalex.org/W2923284745","https://openalex.org/W2936473976","https://openalex.org/W2944998202","https://openalex.org/W2951756094","https://openalex.org/W2969180072","https://openalex.org/W2996457856","https://openalex.org/W2997630430","https://openalex.org/W3011698511","https://openalex.org/W3020257619","https://openalex.org/W3039922084","https://openalex.org/W3043901899","https://openalex.org/W3089609802","https://openalex.org/W3095435122","https://openalex.org/W3149136862","https://openalex.org/W3150581979","https://openalex.org/W3154540413","https://openalex.org/W3156051371","https://openalex.org/W3184265853","https://openalex.org/W3196994021","https://openalex.org/W3198642874","https://openalex.org/W3210332200","https://openalex.org/W3214870576","https://openalex.org/W4200194471","https://openalex.org/W4200472293","https://openalex.org/W4220898475","https://openalex.org/W4225701789","https://openalex.org/W4283463448","https://openalex.org/W4309765941","https://openalex.org/W4311364181","https://openalex.org/W4311475743","https://openalex.org/W4319871149"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Intrinsic":[0],"disorder":[1,19,50,75,77,85,97],"in":[2,7,32],"proteins":[3,125],"is":[4,37,138],"relatively":[5],"abundant":[6],"nature":[8],"and":[9,42,73,76,88,101,106,128],"essential":[10],"for":[11],"a":[12,44,68,83],"broad":[13],"spectrum":[14],"of":[15,71,112,115,121,132],"cellular":[16],"functions.":[17,51],"While":[18],"can":[20],"be":[21],"accurately":[22],"predicted":[23],"from":[24],"protein":[25],"sequences,":[26],"as":[27],"it":[28,36],"was":[29],"empirically":[30],"demonstrated":[31],"recent":[33],"community-organized":[34],"assessments,":[35],"rather":[38],"challenging":[39],"to":[40,67,123],"collect":[41],"compile":[43],"comprehensive":[45],"prediction":[46],"that":[47,63,92],"covers":[48],"multiple":[49],"To":[52],"this":[53],"end,":[54],"we":[55],"introduce":[56],"the":[57,116,133],"DEPICTER2":[58,109],"(DisorderEd":[59],"PredictIon":[60],"CenTER)":[61],"webserver":[62,137],"offers":[64],"convenient":[65],"access":[66],"curated":[69],"collection":[70],"fast":[72],"accurate":[74],"function":[78],"predictors.":[79],"This":[80],"server":[81],"includes":[82],"state-of-the-art":[84],"predictor,":[86],"flDPnn,":[87],"five":[89],"modern":[90],"methods":[91],"cover":[93],"all":[94],"currently":[95],"predictable":[96],"functions:":[98],"disordered":[99],"linkers":[100],"protein,":[102],"peptide,":[103],"DNA,":[104],"RNA":[105],"lipid":[107],"binding.":[108],"allows":[110],"selection":[111],"any":[113],"combination":[114],"six":[117],"methods,":[118],"batch":[119],"predictions":[120],"up":[122],"25":[124],"per":[126],"request":[127],"provides":[129],"interactive":[130],"visualization":[131],"resulting":[134],"predictions.":[135],"The":[136],"freely":[139],"available":[140],"at":[141],"http://biomine.cs.vcu.edu/servers/DEPICTER2/.":[142]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6}],"updated_date":"2026-01-21T23:30:37.877113","created_date":"2025-10-10T00:00:00"}
