{"id":"https://openalex.org/W4368358104","doi":"https://doi.org/10.1093/nar/gkad326","title":"Proksee: in-depth characterization and visualization of bacterial genomes","display_name":"Proksee: in-depth characterization and visualization of bacterial genomes","publication_year":2023,"publication_date":"2023-05-04","ids":{"openalex":"https://openalex.org/W4368358104","doi":"https://doi.org/10.1093/nar/gkad326","pmid":"https://pubmed.ncbi.nlm.nih.gov/37140037"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad326","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad326","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad326/50195722/gkad326.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad326/50195722/gkad326.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088336121","display_name":"Jason R. Grant","orcid":"https://orcid.org/0000-0002-1197-1131"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jason R Grant","raw_affiliation_strings":["Agriculture, Food & Nutritional Science, University of Alberta , Edmonton , Alberta \u00a0T6G 2P5, Canada"],"affiliations":[{"raw_affiliation_string":"Agriculture, Food & Nutritional Science, University of Alberta , Edmonton , Alberta \u00a0T6G 2P5, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065194419","display_name":"Eric Enns","orcid":null},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Eric Enns","raw_affiliation_strings":["National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada"],"affiliations":[{"raw_affiliation_string":"National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090974807","display_name":"Eric Marinier","orcid":null},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Eric Marinier","raw_affiliation_strings":["National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada"],"affiliations":[{"raw_affiliation_string":"National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109719344","display_name":"Arnab Mandal","orcid":"https://orcid.org/0009-0006-1154-788X"},"institutions":[{"id":"https://openalex.org/I46247651","display_name":"University of Manitoba","ror":"https://ror.org/02gfys938","country_code":"CA","type":"education","lineage":["https://openalex.org/I46247651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Arnab Mandal","raw_affiliation_strings":["Medical Microbiology & Infectious Diseases, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada"],"affiliations":[{"raw_affiliation_string":"Medical Microbiology & Infectious Diseases, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","institution_ids":["https://openalex.org/I46247651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017186672","display_name":"Emily K. Herman","orcid":"https://orcid.org/0000-0002-5327-0755"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Emily K Herman","raw_affiliation_strings":["Agriculture, Food & Nutritional Science, University of Alberta , Edmonton , Alberta \u00a0T6G 2P5, Canada"],"affiliations":[{"raw_affiliation_string":"Agriculture, Food & Nutritional Science, University of Alberta , Edmonton , Alberta \u00a0T6G 2P5, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100662350","display_name":"Chih\u2010Yu Chen","orcid":"https://orcid.org/0000-0003-4790-0025"},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]},{"id":"https://openalex.org/I46247651","display_name":"University of Manitoba","ror":"https://ror.org/02gfys938","country_code":"CA","type":"education","lineage":["https://openalex.org/I46247651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chih-yu Chen","raw_affiliation_strings":["Biochemistry & Medical Genetics, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada"],"affiliations":[{"raw_affiliation_string":"Biochemistry & Medical Genetics, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","institution_ids":["https://openalex.org/I46247651"]},{"raw_affiliation_string":"National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088735539","display_name":"Morag Graham","orcid":null},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]},{"id":"https://openalex.org/I46247651","display_name":"University of Manitoba","ror":"https://ror.org/02gfys938","country_code":"CA","type":"education","lineage":["https://openalex.org/I46247651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Morag Graham","raw_affiliation_strings":["Medical Microbiology & Infectious Diseases, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada"],"affiliations":[{"raw_affiliation_string":"Medical Microbiology & Infectious Diseases, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","institution_ids":["https://openalex.org/I46247651"]},{"raw_affiliation_string":"National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008793716","display_name":"Gary Van Domselaar","orcid":"https://orcid.org/0000-0003-1139-4458"},"institutions":[{"id":"https://openalex.org/I177235860","display_name":"Public Health Agency of Canada","ror":"https://ror.org/023xf2a37","country_code":"CA","type":"government","lineage":["https://openalex.org/I1288894424","https://openalex.org/I177235860"]},{"id":"https://openalex.org/I46247651","display_name":"University of Manitoba","ror":"https://ror.org/02gfys938","country_code":"CA","type":"education","lineage":["https://openalex.org/I46247651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gary Van\u00a0Domselaar","raw_affiliation_strings":["Medical Microbiology & Infectious Diseases, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada"],"affiliations":[{"raw_affiliation_string":"Medical Microbiology & Infectious Diseases, University of Manitoba , Winnipeg , Manitoba \u00a0R3E 0J9, Canada","institution_ids":["https://openalex.org/I46247651"]},{"raw_affiliation_string":"National Microbiology Laboratory, Public Health Agency of Canada , Winnipeg , Manitoba \u00a0R3E 3R2, Canada","institution_ids":["https://openalex.org/I177235860"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059930476","display_name":"Paul Stothard","orcid":"https://orcid.org/0000-0003-4263-969X"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Paul Stothard","raw_affiliation_strings":["Agriculture, Food & Nutritional Science, University of Alberta , Edmonton , Alberta \u00a0T6G 2P5, Canada"],"affiliations":[{"raw_affiliation_string":"Agriculture, Food & Nutritional Science, University of Alberta , Edmonton , Alberta \u00a0T6G 2P5, Canada","institution_ids":["https://openalex.org/I154425047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5088336121"],"corresponding_institution_ids":["https://openalex.org/I154425047"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":240.0135,"has_fulltext":true,"cited_by_count":1572,"citation_normalized_percentile":{"value":0.99996142,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"W1","first_page":"W484","last_page":"W492"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.7527590990066528},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.742032527923584},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6225447058677673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.614473283290863},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.526908814907074},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.49053114652633667},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.47333723306655884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44906583428382874},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.4453994929790497},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4287511706352234},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.41760358214378357},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38587716221809387},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3815586566925049},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36106792092323303},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3431723117828369},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28338325023651123},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2420976459980011},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12450352311134338}],"concepts":[{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.7527590990066528},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.742032527923584},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6225447058677673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.614473283290863},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.526908814907074},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.49053114652633667},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.47333723306655884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44906583428382874},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.4453994929790497},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4287511706352234},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.41760358214378357},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38587716221809387},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3815586566925049},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36106792092323303},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3431723117828369},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28338325023651123},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2420976459980011},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12450352311134338},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad326","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad326","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad326/50195722/gkad326.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37140037","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37140037","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320063","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320063","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320063/pdf/gkad326.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad326","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad326","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad326/50195722/gkad326.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320331257","display_name":"Alliance de recherche num\u00e9rique du Canada","ror":"https://ror.org/010r6td27"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4368358104.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2063756105","https://openalex.org/W2091030812","https://openalex.org/W2096093282","https://openalex.org/W2115127793","https://openalex.org/W2116901163","https://openalex.org/W2120902911","https://openalex.org/W2127096898","https://openalex.org/W2153369847","https://openalex.org/W2157748357","https://openalex.org/W2158804744","https://openalex.org/W2470052926","https://openalex.org/W2610656577","https://openalex.org/W2740005242","https://openalex.org/W2803245377","https://openalex.org/W2894808609","https://openalex.org/W2951254987","https://openalex.org/W2981519702","https://openalex.org/W3017386511","https://openalex.org/W3127656915","https://openalex.org/W3209528471","https://openalex.org/W4293446896","https://openalex.org/W4306871314","https://openalex.org/W4308616455","https://openalex.org/W4309157457","https://openalex.org/W6673264805","https://openalex.org/W6677571359","https://openalex.org/W6770028678"],"related_works":["https://openalex.org/W4283384467","https://openalex.org/W2020006618","https://openalex.org/W2139563042","https://openalex.org/W2767058741","https://openalex.org/W3121387483","https://openalex.org/W4213125126","https://openalex.org/W3180309927","https://openalex.org/W2101970065","https://openalex.org/W2943064171","https://openalex.org/W4368358104"],"abstract_inverted_index":{"Proksee":[0,19,48,53,81],"(https://proksee.ca)":[1],"provides":[2,66],"users":[3,38],"with":[4],"a":[5,41,45,62,90,96,163],"powerful,":[6],"easy-to-use,":[7],"and":[8,15,65,73,84,104,134,139,148,154,177,185],"feature-rich":[9],"system":[10,168],"for":[11,69,102,114,151],"assembling,":[12],"annotating,":[13],"analysing,":[14],"visualizing":[16],"bacterial":[17],"genomes.":[18],"accepts":[20],"Illumina":[21],"sequence":[22,59],"reads":[23],"as":[24],"compressed":[25],"FASTQ":[26],"files":[27,150],"or":[28,34,44,132],"pre-assembled":[29],"contigs":[30],"in":[31,50,136],"raw,":[32],"FASTA,":[33],"GenBank":[35,42],"format.":[36,52],"Alternatively,":[37],"can":[39,125,170],"supply":[40],"accession":[43],"previously":[46],"generated":[47],"map":[49,72,131],"JSON":[51],"then":[54],"performs":[55],"assembly":[56,86],"(for":[57],"raw":[58],"data),":[60],"generates":[61],"graphical":[63,144],"map,":[64],"an":[67,116],"interface":[68],"customizing":[70],"the":[71,130,140,180],"launching":[74],"further":[75],"analysis":[76,106,121,146],"jobs.":[77],"Notable":[78],"features":[79,159],"of":[80,94,119],"include":[82],"unique":[83],"informative":[85],"metrics":[87],"provided":[88,161],"via":[89,162],"custom":[91],"reference":[92],"database":[93],"assemblies;":[95],"deeply":[97],"integrated":[98],"high-performance":[99],"genome":[100],"browser":[101],"viewing":[103],"comparing":[105],"results":[107,124],"at":[108],"individual":[109],"base":[110],"resolution":[111],"(developed":[112],"specifically":[113],"Proksee);":[115],"ever-growing":[117],"list":[118],"embedded":[120],"tools":[122],"whose":[123],"be":[126],"seamlessly":[127],"added":[128],"to":[129,142,173],"searched":[133],"explored":[135],"other":[137],"formats;":[138],"option":[141],"export":[143],"maps,":[145],"results,":[147],"log":[149],"data":[152],"sharing":[153],"research":[155],"reproducibility.":[156],"All":[157],"these":[158],"are":[160],"carefully":[164],"designed":[165],"multi-server":[166],"cloud-based":[167],"that":[169,178],"easily":[171],"scale":[172],"meet":[174],"user":[175],"demand":[176],"ensures":[179],"web":[181],"server":[182],"is":[183],"robust":[184],"responsive.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":244},{"year":2025,"cited_by_count":746},{"year":2024,"cited_by_count":500},{"year":2023,"cited_by_count":82}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
