{"id":"https://openalex.org/W4366235046","doi":"https://doi.org/10.1093/nar/gkad289","title":"MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes","display_name":"MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes","publication_year":2023,"publication_date":"2023-04-18","ids":{"openalex":"https://openalex.org/W4366235046","doi":"https://doi.org/10.1093/nar/gkad289","pmid":"https://pubmed.ncbi.nlm.nih.gov/37070209"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad289","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad289/50004688/gkad289.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad289/50004688/gkad289.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066010552","display_name":"Ricardo E. \u00c1vila","orcid":"https://orcid.org/0000-0002-3482-1486"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ricardo Avila","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082140316","display_name":"Vincent Rubinetti","orcid":"https://orcid.org/0000-0002-4655-3773"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vincent Rubinetti","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, Center for Health AI, University of Colorado School of Medicine , Aurora , CO , USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, Center for Health AI, University of Colorado School of Medicine , Aurora , CO , USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083680292","display_name":"Xinghua Zhou","orcid":"https://orcid.org/0000-0002-9119-3906"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinghua Zhou","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102919440","display_name":"Dongbo Hu","orcid":"https://orcid.org/0000-0003-2606-3969"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongbo Hu","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, Center for Health AI, University of Colorado School of Medicine , Aurora , CO , USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, Center for Health AI, University of Colorado School of Medicine , Aurora , CO , USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003044084","display_name":"Zhongchao Qian","orcid":"https://orcid.org/0000-0001-8334-9467"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhongchao Qian","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013316336","display_name":"Marco Alvarado Cano","orcid":"https://orcid.org/0000-0001-6992-8390"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco Alvarado Cano","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041171964","display_name":"Everaldo Rodolpho","orcid":"https://orcid.org/0009-0002-8973-8126"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Everaldo Rodolpho","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086158264","display_name":"Ginger Tsueng","orcid":"https://orcid.org/0000-0001-9536-9115"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ginger Tsueng","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050692257","display_name":"Casey S. Greene","orcid":"https://orcid.org/0000-0001-8713-9213"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Casey Greene","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, Center for Health AI, University of Colorado School of Medicine , Aurora , CO , USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, Center for Health AI, University of Colorado School of Medicine , Aurora , CO , USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018169284","display_name":"Chunlei Wu","orcid":"https://orcid.org/0000-0002-2629-6124"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chunlei Wu","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA"],"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla , CA , USA","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5018169284","https://openalex.org/A5050692257"],"corresponding_institution_ids":["https://openalex.org/I123431417","https://openalex.org/I921990950"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.4669,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66344842,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"51","issue":"W1","first_page":"W350","last_page":"W356"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7952353954315186},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6224530339241028},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.556303083896637},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5490354895591736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5111456513404846},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.47525879740715027},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4535828232765198},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.4236568808555603},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39581751823425293},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36312335729599},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17552554607391357},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10181242227554321}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7952353954315186},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6224530339241028},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.556303083896637},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5490354895591736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5111456513404846},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.47525879740715027},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4535828232765198},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.4236568808555603},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39581751823425293},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36312335729599},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17552554607391357},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10181242227554321},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkad289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad289","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad289/50004688/gkad289.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:37070209","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37070209","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10481249","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10481249","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10481249/pdf/gkad289.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad289","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad289/50004688/gkad289.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1187543470","display_name":null,"funder_award_id":"GM08392","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5035198061","display_name":null,"funder_award_id":"GM083924","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G516917286","display_name":null,"funder_award_id":"HG010067","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5592906397","display_name":null,"funder_award_id":"R01CA237170","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G634662700","display_name":null,"funder_award_id":"R01HG010067","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4366235046.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1644197353","https://openalex.org/W1982390234","https://openalex.org/W1989277387","https://openalex.org/W2041971736","https://openalex.org/W2052250375","https://openalex.org/W2125318012","https://openalex.org/W2128016314","https://openalex.org/W2130410032","https://openalex.org/W2130479394","https://openalex.org/W2143965359","https://openalex.org/W2147526198","https://openalex.org/W2302501749","https://openalex.org/W2347037915","https://openalex.org/W2460986258","https://openalex.org/W2557981253","https://openalex.org/W2720897370","https://openalex.org/W2767914218","https://openalex.org/W2952880826","https://openalex.org/W3112376646","https://openalex.org/W3112600195","https://openalex.org/W3209545809","https://openalex.org/W3211402536","https://openalex.org/W3214608846","https://openalex.org/W4205440179","https://openalex.org/W4231254854","https://openalex.org/W4297458751","https://openalex.org/W6718517972","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2413568490","https://openalex.org/W1913624564","https://openalex.org/W3130054399","https://openalex.org/W4301062032","https://openalex.org/W2343500026","https://openalex.org/W2319837024","https://openalex.org/W2390627310","https://openalex.org/W2413664130","https://openalex.org/W2051731675","https://openalex.org/W2951946877"],"abstract_inverted_index":{"Gene":[0],"definitions":[1],"and":[2,52,93,129,137,152,184],"identifiers":[3,51],"can":[4,19,30,47,177],"be":[5,20],"painful":[6],"to":[7,12,49,62,114,133,182],"manage-more":[8],"so":[9],"when":[10],"trying":[11],"include":[13],"gene":[14,28,42,45,70,101,115,142,162,170,175],"function":[15],"annotations":[16,54,68,92],"as":[17,40,122,179],"this":[18],"highly":[21],"context-dependent.":[22],"Creating":[23],"groups":[24],"of":[25,99,139],"genes":[26],"or":[27,78,189],"sets":[29,71,102,116,143,171,176],"help":[31],"provide":[32,63],"such":[33,121],"context,":[34],"but":[35],"it":[36],"compounds":[37],"the":[38,44,97,135],"issue":[39],"each":[41],"within":[43],"set":[46],"map":[48],"multiple":[50,57,104],"have":[53,111],"derived":[55],"from":[56,103,118,144],"sources.":[58],"We":[59],"developed":[60],"MyGeneset.info":[61,95,159],"an":[64,165],"API":[65],"for":[66,69,73,168,187],"integrated":[67],"suitable":[72],"use":[74],"in":[75],"analytical":[76],"pipelines":[77],"web":[79],"servers.":[80],"Leveraging":[81],"our":[82,107],"previous":[83],"work":[84],"with":[85],"MyGene.info":[86],"(a":[87],"server":[88],"that":[89],"provides":[90],"gene-centric":[91],"identifiers),":[94],"addresses":[96],"challenge":[98],"managing":[100],"resources.":[105],"With":[106],"API,":[108],"users":[109],"readily":[110],"read-only":[112],"access":[113,136],"imported":[117],"commonly-used":[119],"resources":[120],"Wikipathways,":[123],"CTD,":[124],"Reactome,":[125],"SMPDB,":[126],"MSigDB,":[127],"GO,":[128],"DO.":[130],"In":[131],"addition":[132],"supporting":[134],"reuse":[138],"approximately":[140],"180k":[141],"humans,":[145],"common":[146],"model":[147],"organisms":[148],"(mice,":[149],"yeast,":[150],"etc.),":[151],"less-common":[153],"ones":[154],"(e.g.":[155],"black":[156],"cottonwood":[157],"tree),":[158],"supports":[160],"user-created":[161],"sets,":[163],"providing":[164],"important":[166],"means":[167],"making":[169],"more":[172],"FAIR.":[173],"User-created":[174],"serve":[178],"a":[180,193],"way":[181],"store":[183],"manage":[185],"collections":[186],"analysis":[188],"easy":[190],"dissemination":[191],"through":[192],"consistent":[194],"API.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}