{"id":"https://openalex.org/W4361301516","doi":"https://doi.org/10.1093/nar/gkad214","title":"FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins","display_name":"FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins","publication_year":2023,"publication_date":"2023-03-27","ids":{"openalex":"https://openalex.org/W4361301516","doi":"https://doi.org/10.1093/nar/gkad214","pmid":"https://pubmed.ncbi.nlm.nih.gov/36987846"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkad214","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad214","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad214/49686333/gkad214.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad214/49686333/gkad214.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087214235","display_name":"Andr\u00e1s Hatos","orcid":"https://orcid.org/0000-0001-9224-9820"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210149244","display_name":"Swiss Cancer Center L\u00e9man","ror":"https://ror.org/03kwyfa97","country_code":"CH","type":"facility","lineage":["https://openalex.org/I114457229","https://openalex.org/I2802229882","https://openalex.org/I4210106256","https://openalex.org/I4210149244","https://openalex.org/I97565354"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH","IT"],"is_corresponding":false,"raw_author_name":"Andras Hatos","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , Padova , Italy","Department of Computational Biology, University of Lausanne , Lausanne\u00a01015 , Switzerland","Department of Oncology, Lausanne University Hospital , Lausanne\u00a01011 , Switzerland","Swiss Cancer Center Leman , Lausanne\u00a01011 , Switzerland","Swiss Institute of Bioinformatics , Lausanne1015 , Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-9224-9820","affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , Padova , Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne , Lausanne\u00a01015 , Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Department of Oncology, Lausanne University Hospital , Lausanne\u00a01011 , Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Cancer Center Leman , Lausanne\u00a01011 , Switzerland","institution_ids":["https://openalex.org/I4210149244"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Lausanne1015 , Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052389219","display_name":"Jo\u00e3o M. C. Teixeira","orcid":"https://orcid.org/0000-0002-9113-0622"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o M C Teixeira","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , Padova , Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , Padova , Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051970130","display_name":"Susana Barrera-Vilarmau","orcid":"https://orcid.org/0000-0003-4868-6593"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Susana Barrera-Vilarmau","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , Padova , Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , Padova , Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090483830","display_name":"Attila Horv\u00e1th","orcid":"https://orcid.org/0000-0002-6127-8925"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Attila Horvath","raw_affiliation_strings":["John Curtin School of Medical Research, The Australian National University , Acton , Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"John Curtin School of Medical Research, The Australian National University , Acton , Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvio\u00a0C E Tosatto","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , Padova , Italy"],"raw_orcid":"https://orcid.org/0000-0003-4525-7793","affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , Padova , Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038452125","display_name":"Michele Vendruscolo","orcid":"https://orcid.org/0000-0002-3616-1610"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michele Vendruscolo","raw_affiliation_strings":["Centre for Misfolding Diseases, Department of Chemistry, University of Cambridge , UK"],"raw_orcid":"https://orcid.org/0000-0002-3616-1610","affiliations":[{"raw_affiliation_string":"Centre for Misfolding Diseases, Department of Chemistry, University of Cambridge , UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013000080","display_name":"M\u00f3nika Fuxreiter","orcid":"https://orcid.org/0000-0002-4463-6727"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Monika Fuxreiter","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , Padova , Italy","Department of Physics and Astronomy, University of Padova , Padova , Italy"],"raw_orcid":"https://orcid.org/0000-0002-4463-6727","affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , Padova , Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Department of Physics and Astronomy, University of Padova , Padova , Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5013000080"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.3185,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.89233443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"51","issue":"W1","first_page":"W198","last_page":"W206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6902315020561218},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6296500563621521},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5808591842651367},{"id":"https://openalex.org/keywords/plasma-protein-binding","display_name":"Plasma protein binding","score":0.5778034329414368},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5606931447982788},{"id":"https://openalex.org/keywords/multiplicity","display_name":"Multiplicity (mathematics)","score":0.5439609885215759},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4904470145702362},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4622940719127655},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4618503153324127},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.43282386660575867},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4259706139564514},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.41695383191108704},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.39607638120651245},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24939295649528503},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.23428088426589966},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19489729404449463},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.175464928150177},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.16439351439476013},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08433455228805542},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.0719403326511383}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6902315020561218},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6296500563621521},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5808591842651367},{"id":"https://openalex.org/C51639874","wikidata":"https://www.wikidata.org/wiki/Q167149","display_name":"Plasma protein binding","level":2,"score":0.5778034329414368},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5606931447982788},{"id":"https://openalex.org/C156004811","wikidata":"https://www.wikidata.org/wiki/Q2228257","display_name":"Multiplicity (mathematics)","level":2,"score":0.5439609885215759},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4904470145702362},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4622940719127655},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4618503153324127},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.43282386660575867},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4259706139564514},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.41695383191108704},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.39607638120651245},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24939295649528503},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.23428088426589966},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19489729404449463},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.175464928150177},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.16439351439476013},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08433455228805542},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0719403326511383},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkad214","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad214","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad214/49686333/gkad214.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36987846","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36987846","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10320189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10320189","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10320189/pdf/gkad214.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:serval.unil.ch:BIB_6EA32D9B8875","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_6EA32D9B8875","pdf_url":"https://iris.unil.ch/bitstreams/a3dfc152-4fa4-4ad4-a485-383d86ab1903/download","source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol. 51, no. W1, pp. W198-W206","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/3496623","is_oa":true,"landing_page_url":"https://hdl.handle.net/11577/3496623","pdf_url":"https://www.research.unipd.it/bitstream/11577/3496623/2/2023_NAR_FuzPred.pdf","source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unil.ch:iris/180615","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/180615","pdf_url":null,"source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkad214","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkad214","pdf_url":"https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad214/49686333/gkad214.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4516812225","display_name":null,"funder_award_id":"I.G. 26229","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4361301516.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1875095879","https://openalex.org/W1966354757","https://openalex.org/W1976261939","https://openalex.org/W1982457292","https://openalex.org/W1992285513","https://openalex.org/W2023487073","https://openalex.org/W2061791098","https://openalex.org/W2078850432","https://openalex.org/W2100365601","https://openalex.org/W2143488180","https://openalex.org/W2156465034","https://openalex.org/W2171722004","https://openalex.org/W2197515196","https://openalex.org/W2247587030","https://openalex.org/W2396676392","https://openalex.org/W2541950838","https://openalex.org/W2791248032","https://openalex.org/W2901854376","https://openalex.org/W2971594646","https://openalex.org/W2980646921","https://openalex.org/W2987184424","https://openalex.org/W3003305204","https://openalex.org/W3007953280","https://openalex.org/W3031661900","https://openalex.org/W3095583226","https://openalex.org/W3104929221","https://openalex.org/W3112123143","https://openalex.org/W3112376646","https://openalex.org/W3112873140","https://openalex.org/W3159719254","https://openalex.org/W3166344905","https://openalex.org/W3177828909","https://openalex.org/W3193864919","https://openalex.org/W3211552339","https://openalex.org/W3211795435","https://openalex.org/W3211880557","https://openalex.org/W4281490610","https://openalex.org/W4281790889","https://openalex.org/W4292112379","https://openalex.org/W4296779471","https://openalex.org/W4296794332","https://openalex.org/W4308373032","https://openalex.org/W4308616064","https://openalex.org/W4309828316","https://openalex.org/W4311287562","https://openalex.org/W6769312517","https://openalex.org/W6770686123"],"related_works":["https://openalex.org/W2072536165","https://openalex.org/W969906062","https://openalex.org/W2066297967","https://openalex.org/W2789781555","https://openalex.org/W2122839549","https://openalex.org/W2074171155","https://openalex.org/W1971181276","https://openalex.org/W1966607206","https://openalex.org/W2045860728","https://openalex.org/W2986144390"],"abstract_inverted_index":{"Proteins":[0],"form":[1],"complex":[2],"interactions":[3,176],"in":[4,28,72,134],"the":[5,23,39,44,62,82,91,95,98,103,108,135,139,142,168],"cellular":[6,24,188],"environment":[7],"to":[8,179],"carry":[9],"out":[10],"their":[11,48,54],"functions.":[12],"They":[13],"exhibit":[14],"a":[15,29,68,73,78,118,185],"wide":[16],"range":[17],"of":[18,31,42,94,105,110,121,141,173,181,187],"binding":[19,40,50,55,58,83,96,106,113,122],"modes":[20,51,123],"depending":[21],"on":[22,153],"conditions,":[25],"which":[26],"result":[27],"variety":[30,186],"ordered":[32],"or":[33,76,129],"disordered":[34],"assemblies.":[35],"To":[36,88,137],"help":[37],"rationalise":[38],"behavior":[41],"proteins,":[43],"FuzPred":[45,99,160],"server":[46,162],"predicts":[47],"sequence-based":[49],"without":[52],"specifying":[53],"partners.":[56],"The":[57,159],"mode":[59],"defines":[60],"whether":[61],"bound":[63],"state":[64],"is":[65],"formed":[66],"through":[67,77],"disorder-to-order":[69],"transition":[70,80],"resulting":[71],"well-defined":[74],"conformation,":[75],"disorder-to-disorder":[79],"where":[81],"partners":[84],"remain":[85],"conformationally":[86],"heterogeneous.":[87],"account":[89],"for":[90,131],"context-dependent":[92],"nature":[93],"modes,":[97,107],"method":[100],"also":[101],"estimates":[102],"multiplicity":[104,120],"likelihood":[109],"sampling":[111],"multiple":[112],"modes.":[114],"Protein":[115],"regions":[116,145],"with":[117,146],"high":[119],"may":[124],"serve":[125],"as":[126],"regulatory":[127],"sites":[128],"hot-spots":[130],"structural":[132,169],"transitions":[133],"assembly.":[136],"facilitate":[138],"interpretation":[140],"predictions,":[143],"protein":[144,154],"different":[147],"interaction":[148],"behaviors":[149],"can":[150],"be":[151],"visualised":[152],"structures":[155],"generated":[156],"by":[157],"AlphaFold.":[158],"web":[161],"(https://fuzpred.bio.unipd.it)":[163],"thus":[164],"offers":[165],"insights":[166],"into":[167],"and":[170,177],"dynamical":[171],"changes":[172],"proteins":[174],"upon":[175],"contributes":[178],"development":[180],"structure-function":[182],"relationships":[183],"under":[184],"conditions.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":4}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
