{"id":"https://openalex.org/W4307846923","doi":"https://doi.org/10.1093/nar/gkac977","title":"SulfAtlas, the sulfatase database: state of the art and new developments","display_name":"SulfAtlas, the sulfatase database: state of the art and new developments","publication_year":2022,"publication_date":"2022-11-01","ids":{"openalex":"https://openalex.org/W4307846923","doi":"https://doi.org/10.1093/nar/gkac977","pmid":"https://pubmed.ncbi.nlm.nih.gov/36318251"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac977","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac977","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D647/48440711/gkac977.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D647/48440711/gkac977.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046263414","display_name":"Mark Stam","orcid":"https://orcid.org/0000-0002-7282-5824"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210115028","display_name":"Genoscope","ror":"https://ror.org/028pnqf58","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210115028"]},{"id":"https://openalex.org/I4210128565","display_name":"CEA Paris-Saclay","ror":"https://ror.org/03n15ch10","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Mark Stam","raw_affiliation_strings":["LABGeM, G\u00e9nomique M\u00e9tabolique, CEA, Genoscope, Institut Fran\u00e7ois Jacob, CNRS, Universit\u00e9 d'\u00c9vry, Universit\u00e9 Paris-Saclay , 91057 , Evry , Ile-de-France , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LABGeM, G\u00e9nomique M\u00e9tabolique, CEA, Genoscope, Institut Fran\u00e7ois Jacob, CNRS, Universit\u00e9 d'\u00c9vry, Universit\u00e9 Paris-Saclay , 91057 , Evry , Ile-de-France , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210115028","https://openalex.org/I4210128565","https://openalex.org/I277688954","https://openalex.org/I2738703131"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025058622","display_name":"Pernelle Leli\u00e8vre","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210087003","display_name":"Laboratoire de Biologie Int\u00e9grative des Mod\u00e8les Marins","ror":"https://ror.org/001c8pb03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I39804081","https://openalex.org/I4210087003","https://openalex.org/I4210096427","https://openalex.org/I4210107625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pernelle Leli\u00e8vre","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, FR2424, ABiMS, Station Biologique de Roscoff , 29680 , Roscoff , Bretagne , France","Sorbonne Universit\u00e9, CNRS, Laboratory of Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR) , 29680 Roscoff , Bretagne , France","SBR - Station biologique de Roscoff = Roscoff Marine Station (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (Station Biologique de Roscoff\r\n Place Georges Teissier\r\n 29680 Roscoff\r\n+33 0 2 98 29 23 23 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, FR2424, ABiMS, Station Biologique de Roscoff , 29680 , Roscoff , Bretagne , France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Laboratory of Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR) , 29680 Roscoff , Bretagne , France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210087003","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff = Roscoff Marine Station (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]},{"raw_affiliation_string":"ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (Station Biologique de Roscoff\r\n Place Georges Teissier\r\n 29680 Roscoff\r\n+33 0 2 98 29 23 23 - France)","institution_ids":["https://openalex.org/I2802436875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084366252","display_name":"Mark Hoebeke","orcid":"https://orcid.org/0000-0001-6311-9752"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mark Hoebeke","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, FR2424, ABiMS, Station Biologique de Roscoff , 29680 , Roscoff , Bretagne , France","ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (Station Biologique de Roscoff\r\n Place Georges Teissier\r\n 29680 Roscoff\r\n+33 0 2 98 29 23 23 - France)","SBR - Station biologique de Roscoff = Roscoff Marine Station (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"raw_orcid":"https://orcid.org/0000-0001-6311-9752","affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, FR2424, ABiMS, Station Biologique de Roscoff , 29680 , Roscoff , Bretagne , France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (Station Biologique de Roscoff\r\n Place Georges Teissier\r\n 29680 Roscoff\r\n+33 0 2 98 29 23 23 - France)","institution_ids":["https://openalex.org/I2802436875"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff = Roscoff Marine Station (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040685674","display_name":"Erwan Corre","orcid":"https://orcid.org/0000-0001-6354-2278"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Erwan Corre","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, FR2424, ABiMS, Station Biologique de Roscoff , 29680 , Roscoff , Bretagne , France","SBR - Station biologique de Roscoff = Roscoff Marine Station (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (Station Biologique de Roscoff\r\n Place Georges Teissier\r\n 29680 Roscoff\r\n+33 0 2 98 29 23 23 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, FR2424, ABiMS, Station Biologique de Roscoff , 29680 , Roscoff , Bretagne , France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff = Roscoff Marine Station (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]},{"raw_affiliation_string":"ABIMS - ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (Station Biologique de Roscoff\r\n Place Georges Teissier\r\n 29680 Roscoff\r\n+33 0 2 98 29 23 23 - France)","institution_ids":["https://openalex.org/I2802436875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082584118","display_name":"Tristan Barbeyron","orcid":"https://orcid.org/0000-0002-5504-5236"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210087003","display_name":"Laboratoire de Biologie Int\u00e9grative des Mod\u00e8les Marins","ror":"https://ror.org/001c8pb03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I39804081","https://openalex.org/I4210087003","https://openalex.org/I4210096427","https://openalex.org/I4210107625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Tristan Barbeyron","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Laboratory of Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR) , 29680 Roscoff , Bretagne , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Laboratory of Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR) , 29680 Roscoff , Bretagne , France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210087003","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082328626","display_name":"Gurvan Michel","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210087003","display_name":"Laboratoire de Biologie Int\u00e9grative des Mod\u00e8les Marins","ror":"https://ror.org/001c8pb03","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I39804081","https://openalex.org/I4210087003","https://openalex.org/I4210096427","https://openalex.org/I4210107625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gurvan Michel","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, Laboratory of Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR) , 29680 Roscoff , Bretagne , France"],"raw_orcid":"https://orcid.org/0000-0002-3009-6205","affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, Laboratory of Integrative Biology of Marine Models (LBI2M), Station Biologique de Roscoff (SBR) , 29680 Roscoff , Bretagne , France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210087003","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5046263414"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210115028","https://openalex.org/I4210128565"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3383,"currency":"EUR","value_usd":3648},"fwci":6.4393,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.97773053,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D647","last_page":"D653"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10945","display_name":"Lysosomal Storage Disorders Research","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10945","display_name":"Lysosomal Storage Disorders Research","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12683","display_name":"Studies on Chitinases and Chitosanases","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7726906538009644},{"id":"https://openalex.org/keywords/sulfatase","display_name":"Sulfatase","score":0.6360628604888916},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5625238418579102},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5407211184501648},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.52042156457901},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5077860951423645},{"id":"https://openalex.org/keywords/subfamily","display_name":"Subfamily","score":0.5022106170654297},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4670625627040863},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44149288535118103},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.428183913230896},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.420616090297699},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3862941861152649},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34779754281044006},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3457517623901367},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28243425488471985},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2668973207473755},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15688440203666687},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07578754425048828}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7726906538009644},{"id":"https://openalex.org/C2780871851","wikidata":"https://www.wikidata.org/wiki/Q7636184","display_name":"Sulfatase","level":3,"score":0.6360628604888916},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5625238418579102},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5407211184501648},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.52042156457901},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5077860951423645},{"id":"https://openalex.org/C50929876","wikidata":"https://www.wikidata.org/wiki/Q164280","display_name":"Subfamily","level":3,"score":0.5022106170654297},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4670625627040863},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44149288535118103},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.428183913230896},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.420616090297699},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3862941861152649},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34779754281044006},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3457517623901367},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28243425488471985},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2668973207473755},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15688440203666687},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07578754425048828},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013429","descriptor_name":"Sulfatases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013429","descriptor_name":"Sulfatases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013429","descriptor_name":"Sulfatases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013429","descriptor_name":"Sulfatases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D013429","descriptor_name":"Sulfatases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D013429","descriptor_name":"Sulfatases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac977","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac977","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D647/48440711/gkac977.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36318251","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36318251","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-03948623v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03948623","pdf_url":"https://hal.science/hal-03948623/document","source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/51/D1/D647/6786190?login=true","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:9825549","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825549","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac977","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac977","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D647/48440711/gkac977.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2558356852","display_name":null,"funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320316916","funder_display_name":"Institut Fran\u00e7ais de Bioinformatique"},{"id":"https://openalex.org/G3075810671","display_name":null,"funder_award_id":"ANR-10-BTBR-04","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3238466897","display_name":null,"funder_award_id":"10-BTBR-04","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3432228485","display_name":null,"funder_award_id":"14-CE19-0020","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5802621812","display_name":null,"funder_award_id":"ANR-11-INBS","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6068764742","display_name":null,"funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G752369905","display_name":null,"funder_award_id":"ANR-10-BTBR","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G888225428","display_name":"Discovery of novel enzymes for the valorization of algal biomass","funder_award_id":"ANR-14-CE19-0020","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320316916","display_name":"Institut Fran\u00e7ais de Bioinformatique","ror":"https://ror.org/045f7pv37"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307846923.pdf","grobid_xml":"https://content.openalex.org/works/W4307846923.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1782752371","https://openalex.org/W1981885441","https://openalex.org/W1989669198","https://openalex.org/W1991737928","https://openalex.org/W2001714428","https://openalex.org/W2022767095","https://openalex.org/W2029195137","https://openalex.org/W2033935474","https://openalex.org/W2069648309","https://openalex.org/W2084431722","https://openalex.org/W2086003789","https://openalex.org/W2094854249","https://openalex.org/W2099946731","https://openalex.org/W2107158607","https://openalex.org/W2110679449","https://openalex.org/W2128285159","https://openalex.org/W2137597742","https://openalex.org/W2146277490","https://openalex.org/W2148047088","https://openalex.org/W2152207030","https://openalex.org/W2155920295","https://openalex.org/W2158714788","https://openalex.org/W2224056471","https://openalex.org/W2244068090","https://openalex.org/W2336400828","https://openalex.org/W2532767550","https://openalex.org/W2544180383","https://openalex.org/W2579986502","https://openalex.org/W2730311072","https://openalex.org/W2751583588","https://openalex.org/W2769452693","https://openalex.org/W2885289239","https://openalex.org/W2890634998","https://openalex.org/W2943693794","https://openalex.org/W2956832867","https://openalex.org/W2981519702","https://openalex.org/W3003905606","https://openalex.org/W3026373931","https://openalex.org/W3104537585","https://openalex.org/W3112376646","https://openalex.org/W3145289798","https://openalex.org/W3185691449","https://openalex.org/W3203502883","https://openalex.org/W3217216416","https://openalex.org/W4211206272","https://openalex.org/W4212810948","https://openalex.org/W4220739458","https://openalex.org/W4245572222","https://openalex.org/W4282964113","https://openalex.org/W6680215730","https://openalex.org/W6770028678"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W2170381940","https://openalex.org/W2472351724","https://openalex.org/W2993777277","https://openalex.org/W2244068090"],"abstract_inverted_index":{"SulfAtlas":[0,158],"(https://sulfatlas.sb-roscoff.fr/)":[1],"is":[2,26,143],"a":[3,8,31,39,79,84,125,145],"knowledge-based":[4],"resource":[5,159],"dedicated":[6],"to":[7,37,50,56,63,153,172],"sequence-based":[9],"classification":[10],"of":[11,67,117,148],"sulfatases.":[12],"Currently":[13],"four":[14],"sulfatase":[15,102],"families":[16],"exist":[17],"(S1-S4)":[18],"and":[19,59,83,111],"the":[20,68,97,101,105,114,149,156],"largest":[21],"family":[22],"(S1,":[23],"formylglycine-dependent":[24],"sulfatases)":[25],"divided":[27],"into":[28],"subfamilies":[29],"by":[30],"phylogenetic":[32],"approach,":[33],"each":[34,136],"subfamily":[35],"corresponding":[36],"either":[38],"single":[40],"characterized":[41],"specificity":[42],"(or":[43],"few":[44],"specificities":[45],"in":[46,100,104,119,167,176],"some":[47],"cases)":[48],"or":[49],"unknown":[51],"substrates.":[52],"Sequences":[53],"are":[54],"linked":[55],"their":[57],"biochemical":[58],"structural":[60],"information":[61],"according":[62],"an":[64],"expert":[65],"scrutiny":[66],"available":[69],"literature.":[70],"Database":[71],"browsing":[72],"was":[73],"initially":[74],"made":[75],"possible":[76],"both":[77],"through":[78],"keyword":[80],"search":[81,128],"engine":[82,129],"specific":[85],"sequence":[86],"similarity":[87],"(BLAST)":[88],"server.":[89],"In":[90],"this":[91],"article,":[92],"we":[93,122],"will":[94],"briefly":[95],"summarize":[96],"experimental":[98],"progresses":[99],"field":[103],"last":[106],"6":[107],"years.":[108],"To":[109],"improve":[110],"speed":[112],"up":[113],"(sub)family":[115],"assignment":[116],"sulfatases":[118],"(meta)genomic":[120],"data,":[121],"have":[123],"developed":[124],"new,":[126],"freely-accessible":[127],"using":[130],"Hidden":[131],"Markov":[132],"model":[133],"(HMM)":[134],"for":[135],"(sub)family.":[137],"This":[138],"new":[139],"tool":[140],"(SulfAtlas":[141],"HMM)":[142],"also":[144],"key":[146],"part":[147],"internal":[150],"pipeline":[151],"used":[152],"regularly":[154],"update":[155],"database.":[157],"has":[160],"indeed":[161],"significantly":[162],"grown":[163],"since":[164],"its":[165],"creation":[166],"2016,":[168],"from":[169],"4550":[170],"sequences":[171,175],"162":[173],"430":[174],"August":[177],"2022.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":9}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}