{"id":"https://openalex.org/W4307838425","doi":"https://doi.org/10.1093/nar/gkac975","title":"REBASE: a database for DNA restriction and modification: enzymes, genes and genomes","display_name":"REBASE: a database for DNA restriction and modification: enzymes, genes and genomes","publication_year":2022,"publication_date":"2022-11-01","ids":{"openalex":"https://openalex.org/W4307838425","doi":"https://doi.org/10.1093/nar/gkac975","pmid":"https://pubmed.ncbi.nlm.nih.gov/36318248"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac975","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac975","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D629/48441133/gkac975.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D629/48441133/gkac975.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091034547","display_name":"Richard J. Roberts","orcid":"https://orcid.org/0000-0002-4348-0169"},"institutions":[{"id":"https://openalex.org/I115020962","display_name":"New England Biolabs (United States)","ror":"https://ror.org/04ywg3445","country_code":"US","type":"company","lineage":["https://openalex.org/I115020962"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Richard J Roberts","raw_affiliation_strings":["New England Biolabs , 240 County Road, Ipswich, MA 01938 USA"],"raw_orcid":"https://orcid.org/0000-0002-4348-0169","affiliations":[{"raw_affiliation_string":"New England Biolabs , 240 County Road, Ipswich, MA 01938 USA","institution_ids":["https://openalex.org/I115020962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076099222","display_name":"Tamas Vincze","orcid":null},"institutions":[{"id":"https://openalex.org/I115020962","display_name":"New England Biolabs (United States)","ror":"https://ror.org/04ywg3445","country_code":"US","type":"company","lineage":["https://openalex.org/I115020962"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tamas Vincze","raw_affiliation_strings":["New England Biolabs , 240 County Road, Ipswich, MA 01938 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New England Biolabs , 240 County Road, Ipswich, MA 01938 USA","institution_ids":["https://openalex.org/I115020962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052095966","display_name":"J\u00e1nos P\u00f3sfai","orcid":null},"institutions":[{"id":"https://openalex.org/I115020962","display_name":"New England Biolabs (United States)","ror":"https://ror.org/04ywg3445","country_code":"US","type":"company","lineage":["https://openalex.org/I115020962"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Janos Posfai","raw_affiliation_strings":["New England Biolabs , 240 County Road, Ipswich, MA 01938 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New England Biolabs , 240 County Road, Ipswich, MA 01938 USA","institution_ids":["https://openalex.org/I115020962"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080760402","display_name":"Dana Macelis","orcid":null},"institutions":[{"id":"https://openalex.org/I115020962","display_name":"New England Biolabs (United States)","ror":"https://ror.org/04ywg3445","country_code":"US","type":"company","lineage":["https://openalex.org/I115020962"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dana Macelis","raw_affiliation_strings":["New England Biolabs , 240 County Road, Ipswich, MA 01938 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New England Biolabs , 240 County Road, Ipswich, MA 01938 USA","institution_ids":["https://openalex.org/I115020962"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5091034547"],"corresponding_institution_ids":["https://openalex.org/I115020962"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":11.3097,"has_fulltext":true,"cited_by_count":159,"citation_normalized_percentile":{"value":0.99245427,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D629","last_page":"D630"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10123","display_name":"DNA Repair Mechanisms","score":0.970300018787384,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12770","display_name":"Amino Acid Enzymes and Metabolism","score":0.9674999713897705,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8572845458984375},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6175004839897156},{"id":"https://openalex.org/keywords/restriction-enzyme","display_name":"Restriction enzyme","score":0.5992875099182129},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5573769211769104},{"id":"https://openalex.org/keywords/methyltransferase","display_name":"Methyltransferase","score":0.5421416163444519},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.48981258273124695},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4841040372848511},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.47578203678131104},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4129481017589569},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.353995680809021},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34969472885131836},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07648235559463501}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8572845458984375},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6175004839897156},{"id":"https://openalex.org/C128319531","wikidata":"https://www.wikidata.org/wiki/Q219715","display_name":"Restriction enzyme","level":3,"score":0.5992875099182129},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5573769211769104},{"id":"https://openalex.org/C91965660","wikidata":"https://www.wikidata.org/wiki/Q415875","display_name":"Methyltransferase","level":4,"score":0.5421416163444519},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.48981258273124695},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4841040372848511},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47578203678131104},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4129481017589569},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.353995680809021},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34969472885131836},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07648235559463501}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004262","descriptor_name":"DNA Restriction Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004262","descriptor_name":"DNA Restriction Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004262","descriptor_name":"DNA Restriction Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015254","descriptor_name":"DNA Modification Methylases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015254","descriptor_name":"DNA Modification Methylases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015254","descriptor_name":"DNA Modification Methylases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015280","descriptor_name":"DNA Restriction-Modification Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015280","descriptor_name":"DNA Restriction-Modification Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015280","descriptor_name":"DNA Restriction-Modification Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac975","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac975","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D629/48441133/gkac975.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36318248","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36318248","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825431","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825431","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac975","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac975","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D629/48441133/gkac975.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307991","display_name":"New England Biolabs","ror":"https://ror.org/04ywg3445"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307838425.pdf","grobid_xml":"https://content.openalex.org/works/W4307838425.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1984783889","https://openalex.org/W2042160423","https://openalex.org/W2059188171","https://openalex.org/W2118473805","https://openalex.org/W2132341951","https://openalex.org/W2133620956","https://openalex.org/W3185398769","https://openalex.org/W4247447075","https://openalex.org/W4247927165"],"related_works":["https://openalex.org/W46965905","https://openalex.org/W2089104969","https://openalex.org/W3147900171","https://openalex.org/W3172822044","https://openalex.org/W4384916690","https://openalex.org/W2379639368","https://openalex.org/W2475490100","https://openalex.org/W2605116839","https://openalex.org/W2054210259","https://openalex.org/W2027155900"],"abstract_inverted_index":{"REBASE":[0,97],"is":[1,18,66],"a":[2],"comprehensive":[3],"and":[4,21,27,34,45,52,105],"extensively":[5],"curated":[6],"database":[7],"of":[8,13,71,89,96],"information":[9,23],"about":[10,24],"the":[11,25,68,87,102],"components":[12],"restriction-modification":[14],"(RM)":[15],"systems.":[16],"It":[17],"fully":[19],"referenced":[20],"provides":[22],"recognition":[26,69],"cleavage":[28],"sites":[29],"for":[30,58],"both":[31],"restriction":[32],"enzymes":[33],"DNA":[35,73],"methyltransferases":[36,74],"together":[37],"with":[38],"their":[39],"commercial":[40],"availability,":[41],"methylation":[42],"sensitivity,":[43],"crystal":[44],"sequence":[46,64],"data.":[47],"All":[48],"completely":[49],"sequenced":[50],"genomes":[51],"select":[53],"shotgun":[54],"sequences":[55,70],"are":[56,116],"analyzed":[57],"RM":[59],"system":[60],"components.":[61],"When":[62],"PacBio":[63],"data":[65],"available,":[67],"many":[72],"(MTases)":[75],"can":[76,108],"be":[77,99,109],"determined.":[78],"This":[79],"has":[80],"led":[81],"to":[82],"an":[83],"explosive":[84],"growth":[85],"in":[86,92],"number":[88],"well-characterized":[90],"MTases":[91],"REBASE.":[93],"The":[94],"contents":[95],"may":[98],"browsed":[100],"from":[101],"web":[103],"rebase.neb.com":[104],"selected":[106],"compilations":[107],"downloaded":[110],"by":[111],"FTP":[112],"(ftp.neb.com).":[113],"Monthly":[114],"updates":[115],"also":[117],"available":[118],"via":[119],"email.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":64},{"year":2024,"cited_by_count":43},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-09T07:52:08.696243","created_date":"2025-10-10T00:00:00"}
