{"id":"https://openalex.org/W4307092668","doi":"https://doi.org/10.1093/nar/gkac942","title":"OrganoidDB: a comprehensive organoid database for the multi-perspective exploration of bulk and single-cell transcriptomic profiles of organoids","display_name":"OrganoidDB: a comprehensive organoid database for the multi-perspective exploration of bulk and single-cell transcriptomic profiles of organoids","publication_year":2022,"publication_date":"2022-10-22","ids":{"openalex":"https://openalex.org/W4307092668","doi":"https://doi.org/10.1093/nar/gkac942","pmid":"https://pubmed.ncbi.nlm.nih.gov/36271792"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac942","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac942","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1086/48441609/gkac942.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1086/48441609/gkac942.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052217053","display_name":"Qinfeng Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinfeng Ma","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077499685","display_name":"Haodong Tao","orcid":"https://orcid.org/0000-0002-0743-4499"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haodong Tao","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":"https://orcid.org/0000-0002-0743-4499","affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100429943","display_name":"Qiang Li","orcid":"https://orcid.org/0000-0002-1686-9005"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Li","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052797122","display_name":"Zhaoyu Zhai","orcid":"https://orcid.org/0000-0002-2983-6149"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyu Zhai","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050674310","display_name":"Xuelu Zhang","orcid":"https://orcid.org/0000-0001-6988-2257"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuelu Zhang","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083028718","display_name":"Zhewei Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhewei Lin","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015037814","display_name":"Ni Kuang","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ni Kuang","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045047208","display_name":"Jianbo Pan","orcid":"https://orcid.org/0000-0001-6014-8160"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianbo Pan","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China"],"raw_orcid":"https://orcid.org/0000-0001-6014-8160","affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016,\u00a0 China","institution_ids":["https://openalex.org/I87780372"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045047208"],"corresponding_institution_ids":["https://openalex.org/I87780372"],"apc_list":{"value":3876,"currency":"USD","value_usd":3876},"apc_paid":{"value":3876,"currency":"USD","value_usd":3876},"fwci":1.2639,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.79055711,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D1086","last_page":"D1093"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organoid","display_name":"Organoid","score":0.9942735433578491},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7213431000709534},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7030720710754395},{"id":"https://openalex.org/keywords/induced-pluripotent-stem-cell","display_name":"Induced pluripotent stem cell","score":0.5775495767593384},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5193392038345337},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.43788546323776245},{"id":"https://openalex.org/keywords/embryonic-stem-cell","display_name":"Embryonic stem cell","score":0.4343675971031189},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3589319586753845},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.2991408109664917},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18528148531913757},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14731746912002563},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12199002504348755}],"concepts":[{"id":"https://openalex.org/C31695470","wikidata":"https://www.wikidata.org/wiki/Q11293125","display_name":"Organoid","level":2,"score":0.9942735433578491},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7213431000709534},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7030720710754395},{"id":"https://openalex.org/C107459253","wikidata":"https://www.wikidata.org/wiki/Q674925","display_name":"Induced pluripotent stem cell","level":4,"score":0.5775495767593384},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5193392038345337},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.43788546323776245},{"id":"https://openalex.org/C145103041","wikidata":"https://www.wikidata.org/wiki/Q1151519","display_name":"Embryonic stem cell","level":3,"score":0.4343675971031189},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3589319586753845},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.2991408109664917},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18528148531913757},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14731746912002563},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12199002504348755}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009940","descriptor_name":"Organoids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009940","descriptor_name":"Organoids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009940","descriptor_name":"Organoids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053687","descriptor_name":"Adult Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053687","descriptor_name":"Adult Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053687","descriptor_name":"Adult Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac942","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac942","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1086/48441609/gkac942.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36271792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36271792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9825539","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825539","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac942","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac942","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1086/48441609/gkac942.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G2303740245","display_name":null,"funder_award_id":"82104063","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3668458064","display_name":null,"funder_award_id":"BJRC202214","funder_id":"https://openalex.org/F4320322595","funder_display_name":"Chongqing Medical University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322595","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307092668.pdf","grobid_xml":"https://content.openalex.org/works/W4307092668.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1533942137","https://openalex.org/W1721421031","https://openalex.org/W2037057633","https://openalex.org/W2044928246","https://openalex.org/W2100239923","https://openalex.org/W2138207763","https://openalex.org/W2146512944","https://openalex.org/W2169456326","https://openalex.org/W2179438025","https://openalex.org/W2273333469","https://openalex.org/W2341128841","https://openalex.org/W2342688693","https://openalex.org/W2466314544","https://openalex.org/W2644618666","https://openalex.org/W2892107476","https://openalex.org/W2894687190","https://openalex.org/W2895456557","https://openalex.org/W2898321887","https://openalex.org/W2903001230","https://openalex.org/W2931036699","https://openalex.org/W2951912016","https://openalex.org/W2964849163","https://openalex.org/W2984472267","https://openalex.org/W2988904063","https://openalex.org/W3012675703","https://openalex.org/W3040646360","https://openalex.org/W3096828292","https://openalex.org/W3102588302","https://openalex.org/W3112600195","https://openalex.org/W3117494630","https://openalex.org/W3147234347","https://openalex.org/W3164692211","https://openalex.org/W3175752499","https://openalex.org/W3183920569","https://openalex.org/W3184729641","https://openalex.org/W3202248730","https://openalex.org/W4206719917","https://openalex.org/W4211240480","https://openalex.org/W4221065117","https://openalex.org/W4225343266","https://openalex.org/W4241872665","https://openalex.org/W6659620103","https://openalex.org/W6719957963","https://openalex.org/W6797786779"],"related_works":["https://openalex.org/W3041652948","https://openalex.org/W3126213550","https://openalex.org/W4376111361","https://openalex.org/W4286561329","https://openalex.org/W3126260752","https://openalex.org/W3093595663","https://openalex.org/W3196990090","https://openalex.org/W2090432210","https://openalex.org/W3031349637","https://openalex.org/W1917346388"],"abstract_inverted_index":{"Organoids,":[0],"three-dimensional":[1],"in":[2,186],"vitro":[3],"tissue":[4,91],"cultures":[5],"derived":[6],"from":[7,79,121],"pluripotent":[8],"(embryonic":[9],"or":[10,12,124],"induced)":[11],"adult":[13],"stem":[14],"cells,":[15],"are":[16,96,180],"promising":[17],"models":[18],"for":[19,42,53,148],"the":[20,54,58],"study":[21],"of":[22,36,57,60,65,74,86,107,168,188],"human":[23,81],"processes":[24],"and":[25,29,70,82,92,128,136,141,159,170,191],"structures,":[26],"disease":[27],"onset":[28],"preclinical":[30],"drug":[31],"development.":[32],"An":[33],"increasing":[34],"amount":[35],"omics":[37],"data":[38],"has":[39],"been":[40],"generated":[41],"organoid":[43,77,116,142,152,173],"studies.":[44],"Here,":[45],"we":[46],"introduce":[47],"OrganoidDB":[48,66,104,162],"(http://www.inbirg.com/organoid_db/),":[49],"a":[50,165],"comprehensive":[51],"resource":[52],"multi-perspective":[55],"exploration":[56],"transcriptomes":[59],"organoids.":[61,103],"The":[62],"current":[63],"release":[64],"includes":[67],"curated":[68],"bulk":[69],"single-cell":[71,160],"transcriptome":[72],"profiles":[73],"16":[75],"218":[76],"samples":[78,143],"both":[80],"mouse.":[83],"Other":[84],"types":[85],"samples,":[87,95],"such":[88],"as":[89],"primary":[90],"cell":[93],"line":[94],"also":[97,145],"integrated":[98],"to":[99,176,183],"enable":[100],"comparisons":[101],"with":[102],"enables":[105],"queries":[106],"gene":[108],"expression":[109],"under":[110],"different":[111,115,119,122,133],"modes,":[112],"e.g.":[113],"across":[114,132],"types,":[117,131],"between":[118,126],"organoids":[120,127,169,178],"sources":[123],"protocols,":[125],"other":[129],"sample":[130],"development":[134],"stages,":[135],"via":[137],"correlation":[138],"analysis.":[139],"Datasets":[140],"can":[144],"be":[146],"browsed":[147],"detailed":[149],"information,":[150,153],"including":[151],"differentially":[154],"expressed":[155],"genes,":[156],"enriched":[157],"pathways":[158],"clustering.":[161],"will":[163],"facilitate":[164],"better":[166],"understanding":[167],"help":[171],"improve":[172],"culture":[174],"protocols":[175],"yield":[177],"that":[179],"highly":[181],"similar":[182],"living":[184],"organs":[185],"terms":[187],"composition,":[189],"architecture":[190],"function.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
