{"id":"https://openalex.org/W4307091591","doi":"https://doi.org/10.1093/nar/gkac917","title":"PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples","display_name":"PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples","publication_year":2022,"publication_date":"2022-10-22","ids":{"openalex":"https://openalex.org/W4307091591","doi":"https://doi.org/10.1093/nar/gkac917","pmid":"https://pubmed.ncbi.nlm.nih.gov/36271793"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac917","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac917","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1483/48441480/gkac917.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1483/48441480/gkac917.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103079486","display_name":"Jinding Liu","orcid":"https://orcid.org/0000-0001-5638-8612"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jinding Liu","raw_affiliation_strings":["Bioinformatics Center, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","Department of Animal Science, Michigan State University , East Lansing, MI 48824, USA"],"raw_orcid":"https://orcid.org/0000-0001-5638-8612","affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Department of Animal Science, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100610339","display_name":"Yaru Zhang","orcid":"https://orcid.org/0000-0002-6167-7248"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaru Zhang","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080558997","display_name":"Yiqing Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiqing Zheng","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yali Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yali Zhu","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058848278","display_name":"Yapin Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yapin Shi","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090399415","display_name":"Zhuoran Guan","orcid":null},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuoran Guan","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103030963","display_name":"Kun Lang","orcid":"https://orcid.org/0000-0001-7794-9634"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Lang","raw_affiliation_strings":["College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Management, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041818639","display_name":"Danyu Shen","orcid":"https://orcid.org/0000-0002-2973-0010"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Danyu Shen","raw_affiliation_strings":["Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053024731","display_name":"Wen Huang","orcid":"https://orcid.org/0000-0001-6788-8364"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wen Huang","raw_affiliation_strings":["Department of Animal Science, Michigan State University , East Lansing, MI 48824, USA"],"raw_orcid":"https://orcid.org/0000-0001-6788-8364","affiliations":[{"raw_affiliation_string":"Department of Animal Science, Michigan State University , East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056206546","display_name":"Daolong Dou","orcid":"https://orcid.org/0000-0001-5226-6642"},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Daolong Dou","raw_affiliation_strings":["Bioinformatics Center, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China"],"raw_orcid":"https://orcid.org/0000-0001-5226-6642","affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Department of Plant Pathology, Nanjing Agricultural University , Nanjing, Jiangsu 210095, China","institution_ids":["https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5041818639","https://openalex.org/A5053024731","https://openalex.org/A5056206546"],"corresponding_institution_ids":["https://openalex.org/I119454577","https://openalex.org/I87216513"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.5985,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.90857797,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D1483","last_page":"D1491"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9539279937744141},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.647649347782135},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.6280010938644409},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6121337413787842},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.59715735912323},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.566652774810791},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.554149329662323},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5445390939712524},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5098870992660522},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.30610716342926025},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.2782079577445984}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9539279937744141},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.647649347782135},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.6280010938644409},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6121337413787842},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.59715735912323},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.566652774810791},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.554149329662323},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5445390939712524},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5098870992660522},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.30610716342926025},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.2782079577445984}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac917","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac917","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1483/48441480/gkac917.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36271793","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36271793","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825497","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825497","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac917","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac917","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1483/48441480/gkac917.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1059270447","display_name":null,"funder_award_id":"32070139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2358721192","display_name":null,"funder_award_id":"32230089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5241923653","display_name":null,"funder_award_id":"32270208","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G569326188","display_name":null,"funder_award_id":"MICL02560","funder_id":"https://openalex.org/F4320312587","funder_display_name":"AgBioResearch, Michigan State University"}],"funders":[{"id":"https://openalex.org/F4320309870","display_name":"Jiangsu Agricultural Science and Technology Innovation Fund","ror":"https://ror.org/0335n2618"},{"id":"https://openalex.org/F4320310016","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320312587","display_name":"AgBioResearch, Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307091591.pdf","grobid_xml":"https://content.openalex.org/works/W4307091591.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W2001338440","https://openalex.org/W2046183549","https://openalex.org/W2066231767","https://openalex.org/W2100137396","https://openalex.org/W2101291993","https://openalex.org/W2114104545","https://openalex.org/W2130410032","https://openalex.org/W2140099276","https://openalex.org/W2141292707","https://openalex.org/W2173732482","https://openalex.org/W2179438025","https://openalex.org/W2418044989","https://openalex.org/W2559588208","https://openalex.org/W2590591045","https://openalex.org/W2606715885","https://openalex.org/W2746949165","https://openalex.org/W2792034759","https://openalex.org/W2800206218","https://openalex.org/W2807287578","https://openalex.org/W2898440040","https://openalex.org/W2951912016","https://openalex.org/W2953067954","https://openalex.org/W2964849163","https://openalex.org/W2988396470","https://openalex.org/W2995527562","https://openalex.org/W3004990516","https://openalex.org/W3047148533","https://openalex.org/W3095583226","https://openalex.org/W3106120778","https://openalex.org/W3121486804","https://openalex.org/W3208031362","https://openalex.org/W3213153027","https://openalex.org/W3215751839","https://openalex.org/W3216588755","https://openalex.org/W3216633781","https://openalex.org/W3217192868","https://openalex.org/W4214511655","https://openalex.org/W4249526157","https://openalex.org/W4309908811"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W2321791250","https://openalex.org/W4213427798","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W2564462691","https://openalex.org/W2023199111"],"abstract_inverted_index":{"Over":[0],"the":[1,35,40],"last":[2],"decade,":[3],"RNA-seq":[4,84,150],"has":[5],"produced":[6],"a":[7,49,63,159,176],"massive":[8],"amount":[9],"of":[10,20,68,162],"plant":[11,69,91,184],"transcriptomic":[12],"sequencing":[13],"data":[14,37,178],"deposited":[15],"in":[16,31,89],"public":[17,22,56,149,188],"databases.":[18],"Reanalysis":[19],"these":[21,137],"datasets":[23,151],"can":[24,142],"generate":[25],"additional":[26],"novel":[27],"hypotheses":[28],"not":[29],"included":[30],"original":[32],"studies.":[33],"However,":[34],"large":[36],"volume":[38],"and":[39,46,72,103,110,131,152,180],"requirement":[41],"for":[42,51,66,183],"specialized":[43],"computational":[44],"resources":[45],"expertise":[47],"present":[48],"barrier":[50],"experimental":[52],"biologists":[53,185],"to":[54,95,100,147,165,186],"explore":[55],"repositories.":[57],"Here,":[58],"we":[59],"introduce":[60],"PlantExp":[61,113,174],"(https://biotec.njau.edu.cn/plantExp),":[62],"database":[64],"platform":[65,182],"exploration":[67],"gene":[70,101],"expression":[71,102,123,126,133],"alternative":[73,104],"splicing":[74,105],"profiles":[75,106],"based":[76],"on":[77],"131":[78],"423":[79],"uniformly":[80],"processed":[81],"publicly":[82],"available":[83],"samples":[85],"from":[86],"85":[87],"species":[88],"24":[90],"orders.":[92],"In":[93,172],"addition":[94],"two":[96],"common":[97],"retrieval":[98],"accesses":[99],"by":[107],"functional":[108],"terms":[109],"sequence":[111],"similarity,":[112],"is":[114],"equipped":[115],"with":[116],"four":[117],"online":[118,138],"analysis":[119,130,139,170,181],"tools,":[120,140],"including":[121],"differential":[122],"analysis,":[124,127],"specific":[125],"co-expression":[128],"network":[129],"cross-species":[132],"conservation":[134],"analysis.":[135],"With":[136],"users":[141,167],"flexibly":[143],"customize":[144],"sample":[145],"groups":[146],"reanalyze":[148],"obtain":[153],"new":[154],"insights.":[155],"Furthermore,":[156],"it":[157],"offers":[158],"wide":[160],"range":[161],"visualization":[163],"tools":[164],"help":[166],"intuitively":[168],"understand":[169],"results.":[171],"conclusion,":[173],"provides":[175],"valuable":[177],"resource":[179],"utilize":[187],"RNA-seq.":[189],"datasets.":[190]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":10}],"updated_date":"2026-06-10T14:10:52.464848","created_date":"2025-10-10T00:00:00"}
