{"id":"https://openalex.org/W4307034884","doi":"https://doi.org/10.1093/nar/gkac907","title":"AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations","display_name":"AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations","publication_year":2022,"publication_date":"2022-10-21","ids":{"openalex":"https://openalex.org/W4307034884","doi":"https://doi.org/10.1093/nar/gkac907","pmid":"https://pubmed.ncbi.nlm.nih.gov/36268869"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac907","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D39/48441221/gkac907.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D39/48441221/gkac907.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050751736","display_name":"Wen\u2010Kang Shen","orcid":null},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen-Kang Shen","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":"https://orcid.org/0000-0002-9168-4465","affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033533946","display_name":"Si\u2010Yi Chen","orcid":"https://orcid.org/0000-0001-8076-0576"},"institutions":[{"id":"https://openalex.org/I1318643470","display_name":"Union Hospital","ror":"https://ror.org/01j7r2734","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I1318643470"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Si-Yi Chen","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","Institute of Hematology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":"https://orcid.org/0000-0001-8076-0576","affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Institute of Hematology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I1318643470","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023012346","display_name":"Zi-Quan Gan","orcid":null},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-Quan Gan","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100777150","display_name":"Yuzhu Zhang","orcid":"https://orcid.org/0000-0001-7882-5692"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-Zhu Zhang","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101747514","display_name":"Tao Yue","orcid":"https://orcid.org/0000-0001-8122-9330"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Yue","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100700410","display_name":"Miaomiao Chen","orcid":"https://orcid.org/0000-0002-4866-8072"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Miao-Miao Chen","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052691524","display_name":"Yu Xue","orcid":"https://orcid.org/0000-0002-9403-6869"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Xue","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":"https://orcid.org/0000-0002-9403-6869","affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100422517","display_name":"Hui Hu","orcid":"https://orcid.org/0000-0002-9208-1041"},"institutions":[{"id":"https://openalex.org/I4210160344","display_name":"Tongji Hospital","ror":"https://ror.org/04xy45965","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210160344"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hui Hu","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","Department of Laboratory Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":"https://orcid.org/0000-0002-9208-1041","affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Department of Laboratory Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641","https://openalex.org/I4210160344"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009558607","display_name":"An\u2010Yuan Guo","orcid":"https://orcid.org/0000-0002-5099-7465"},"institutions":[{"id":"https://openalex.org/I4210160344","display_name":"Tongji Hospital","ror":"https://ror.org/04xy45965","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210160344"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"An-Yuan Guo","raw_affiliation_strings":["Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","Department of Laboratory Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China"],"raw_orcid":"https://orcid.org/0000-0002-5099-7465","affiliations":[{"raw_affiliation_string":"Center for Artificial Intelligence Biology, Hubei Bioinformatics & Molecular Imaging Key Laboratory, Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Department of Laboratory Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology , Wuhan, Hubei\u00a0430074, China","institution_ids":["https://openalex.org/I47720641","https://openalex.org/I4210160344"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009558607","https://openalex.org/A5100422517"],"corresponding_institution_ids":["https://openalex.org/I4210160344","https://openalex.org/I47720641"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":30.9301,"has_fulltext":true,"cited_by_count":359,"citation_normalized_percentile":{"value":0.99869815,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D39","last_page":"D45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.8754502534866333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8284162282943726},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.729678750038147},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.564315140247345},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5399032235145569},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5382106304168701},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5280612111091614},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5182178616523743},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4301501512527466},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.27815762162208557},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07361260056495667}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.8754502534866333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8284162282943726},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.729678750038147},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.564315140247345},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5399032235145569},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5382106304168701},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5280612111091614},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5182178616523743},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4301501512527466},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.27815762162208557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07361260056495667}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac907","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D39/48441221/gkac907.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36268869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36268869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825474","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825474","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac907","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D39/48441221/gkac907.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6197155150","display_name":null,"funder_award_id":"2021YFF0703704","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7777709168","display_name":null,"funder_award_id":"32100527","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8029532115","display_name":null,"funder_award_id":"2021YFF0703704","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8385643358","display_name":null,"funder_award_id":"2020CFA070","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4307034884.pdf","grobid_xml":"https://content.openalex.org/works/W4307034884.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W2001939488","https://openalex.org/W2033169664","https://openalex.org/W2033478449","https://openalex.org/W2034907050","https://openalex.org/W2043880865","https://openalex.org/W2056499061","https://openalex.org/W2061674320","https://openalex.org/W2068874965","https://openalex.org/W2075406901","https://openalex.org/W2096525273","https://openalex.org/W2108797218","https://openalex.org/W2135553161","https://openalex.org/W2170624222","https://openalex.org/W2170964754","https://openalex.org/W2304402346","https://openalex.org/W2329659234","https://openalex.org/W2533355719","https://openalex.org/W2541585197","https://openalex.org/W2767749844","https://openalex.org/W2769700967","https://openalex.org/W2774439953","https://openalex.org/W2785792383","https://openalex.org/W2891678790","https://openalex.org/W2898789672","https://openalex.org/W2901303766","https://openalex.org/W2908287962","https://openalex.org/W2918063357","https://openalex.org/W2954492537","https://openalex.org/W2969381424","https://openalex.org/W2982521190","https://openalex.org/W2983263940","https://openalex.org/W2988716798","https://openalex.org/W2990435446","https://openalex.org/W2999456717","https://openalex.org/W3004392625","https://openalex.org/W3009746164","https://openalex.org/W3080500495","https://openalex.org/W3090681822","https://openalex.org/W3091866222","https://openalex.org/W3093053585","https://openalex.org/W3095583226","https://openalex.org/W3096828292","https://openalex.org/W3126449432","https://openalex.org/W3133859624","https://openalex.org/W3155338553","https://openalex.org/W3202924278","https://openalex.org/W4205247356","https://openalex.org/W4205440119","https://openalex.org/W4206259166","https://openalex.org/W4289274885","https://openalex.org/W6769689940","https://openalex.org/W6769775530","https://openalex.org/W6769944288"],"related_works":["https://openalex.org/W2139297998","https://openalex.org/W2804921183","https://openalex.org/W3109437984","https://openalex.org/W2462807523","https://openalex.org/W2274932919","https://openalex.org/W4387264054","https://openalex.org/W2152320398","https://openalex.org/W2096403311","https://openalex.org/W2118218075","https://openalex.org/W2113368041"],"abstract_inverted_index":{"Transcription":[0,44],"factors":[1],"(TFs)":[2],"are":[3,98],"proteins":[4],"that":[5],"interact":[6],"with":[7,28,52],"specific":[8],"DNA":[9],"sequences":[10,72],"to":[11,48,66,118,173],"regulate":[12],"gene":[13],"expression":[14,160],"and":[15,31,55,63,84,116,132,144,167,186,193,197],"play":[16],"crucial":[17],"roles":[18],"in":[19,69,90,93,128,149,155],"all":[20],"kinds":[21],"of":[22,195],"biological":[23],"processes.":[24],"To":[25],"keep":[26],"up":[27],"new":[29,114],"data":[30,54,107],"provide":[32],"a":[33,76,180],"more":[34,100],"comprehensive":[35,158,191],"resource":[36,182],"for":[37,162,183],"TF":[38,60,82,126,153,159,185],"research,":[39],"we":[40,78,109],"updated":[41],"the":[42,59,112,119],"Animal":[43],"Factor":[45],"Database":[46],"(AnimalTFDB)":[47],"version":[49],"4.0":[50,92,178],"(http://bioinfo.life.hust.edu.cn/AnimalTFDB4/)":[51],"up-to-date":[53],"functions.":[56],"We":[57],"refined":[58],"family":[61],"rules":[62],"prediction":[64],"pipeline":[65],"predict":[67],"TFs":[68,148,196],"genome-wide":[70],"protein":[71],"from":[73],"Ensembl.":[74],"As":[75],"result,":[77],"predicted":[79,136],"274":[80],"633":[81],"genes":[83,89,127],"150":[85],"726":[86],"transcription":[87,187,198],"cofactor":[88],"AnimalTFDB":[91,103,175,177],"183":[94],"animal":[95],"genomes,":[96],"which":[97,189],"86":[99],"species":[101],"than":[102],"3.0.":[104],"Besides":[105],"double":[106],"volume,":[108],"also":[110],"added":[111],"following":[113],"annotations":[115],"functions":[117,170],"database:":[120],"(i)":[121],"variations":[122],"(including":[123,140],"mutations)":[124],"on":[125,147],"various":[129],"human":[130],"cancers":[131],"other":[133],"diseases;":[134],"(ii)":[135],"post-translational":[137],"modification":[138],"sites":[139],"phosphorylation,":[141],"acetylation,":[142],"methylation":[143],"ubiquitination":[145],"sites)":[146],"8":[150],"species;":[151,164],"(iii)":[152],"regulation":[154],"autophagy;":[156],"(iv)":[157],"annotation":[161,192],"38":[163],"(v)":[165],"exact":[166],"batch":[168],"search":[169,174],"allow":[171],"users":[172],"flexibly.":[176],"is":[179],"useful":[181],"studying":[184],"regulation,":[188],"contains":[190],"classification":[194],"cofactors.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":62},{"year":2025,"cited_by_count":143},{"year":2024,"cited_by_count":119},{"year":2023,"cited_by_count":35}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
