{"id":"https://openalex.org/W4306353428","doi":"https://doi.org/10.1093/nar/gkac905","title":"PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform","display_name":"PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform","publication_year":2022,"publication_date":"2022-10-16","ids":{"openalex":"https://openalex.org/W4306353428","doi":"https://doi.org/10.1093/nar/gkac905","pmid":"https://pubmed.ncbi.nlm.nih.gov/36243989"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac905","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac905","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1109/48441527/gkac905.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1109/48441527/gkac905.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100384237","display_name":"Yimin Wang","orcid":"https://orcid.org/0000-0003-2515-6602"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yimin Wang","raw_affiliation_strings":["Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068195220","display_name":"Yunchao Ling","orcid":"https://orcid.org/0000-0002-5438-0753"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunchao Ling","raw_affiliation_strings":["Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081688615","display_name":"Jiao Gong","orcid":"https://orcid.org/0000-0003-3767-1636"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiao Gong","raw_affiliation_strings":["Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101660015","display_name":"Xiaohan Zhao","orcid":"https://orcid.org/0000-0003-3655-3507"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohan Zhao","raw_affiliation_strings":["Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109965789","display_name":"Hanwen Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanwen Zhou","raw_affiliation_strings":["Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016261979","display_name":"Bo Xie","orcid":"https://orcid.org/0000-0001-9374-863X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Xie","raw_affiliation_strings":["Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044466101","display_name":"Haiyi Lou","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haiyi Lou","raw_affiliation_strings":["State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020947176","display_name":"Xinhao Zhuang","orcid":"https://orcid.org/0000-0002-1873-5131"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinhao Zhuang","raw_affiliation_strings":["Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100364769","display_name":"Jin Li","orcid":"https://orcid.org/0000-0001-9201-2321"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Jin","raw_affiliation_strings":["Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"middle","author":{"id":null,"display_name":"The Han100K Initiative","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"The Han100K Initiative","raw_affiliation_strings":["State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022155426","display_name":"Shaohua Fan","orcid":"https://orcid.org/0000-0003-0610-9106"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shaohua Fan","raw_affiliation_strings":["State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China"],"raw_orcid":"https://orcid.org/0000-0003-0610-9106","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]},{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100419052","display_name":"Guoqing Zhang","orcid":"https://orcid.org/0000-0001-8827-7546"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]},{"id":"https://openalex.org/I4210096013","display_name":"Shanghai Institute of Nutrition and Health","ror":"https://ror.org/00rytkh49","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guoqing Zhang","raw_affiliation_strings":["Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","Department of Liver Surgery and Transplantation Liver Cancer Institute, Zhongshan Hospital, Fudan University , Shanghai 200032 , China","Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","School of Life Science and Technology, ShanghaiTech University , Shanghai 201210 , China","State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Biology, National Genomics Data Center\u00a0& Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences , Shanghai 200031 , China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210096013"]},{"raw_affiliation_string":"Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Liver Surgery and Transplantation Liver Cancer Institute, Zhongshan Hospital, Fudan University , Shanghai 200032 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210127074"]},{"raw_affiliation_string":"Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , Shanghai 201210 , China","institution_ids":["https://openalex.org/I30809798"]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032774298","display_name":"Shuhua Xu","orcid":"https://orcid.org/0000-0002-1975-1002"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]},{"id":"https://openalex.org/I4391768242","display_name":"State Key Laboratory of Genetic Engineering","ror":"https://ror.org/01n3rg866","country_code":null,"type":"facility","lineage":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shuhua Xu","raw_affiliation_strings":["Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","Department of Liver Surgery and Transplantation Liver Cancer Institute, Zhongshan Hospital, Fudan University , Shanghai 200032 , China","Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","School of Life Science and Technology, ShanghaiTech University , Shanghai 201210 , China","State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China"],"raw_orcid":"https://orcid.org/0000-0002-1975-1002","affiliations":[{"raw_affiliation_string":"Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"Department of Liver Surgery and Transplantation Liver Cancer Institute, Zhongshan Hospital, Fudan University , Shanghai 200032 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210127074"]},{"raw_affiliation_string":"Human Phenome Institute, Zhangjiang Fudan International Innovation Center, and Ministry of Education Key Laboratory of Contemporary Anthropology, Fudan University , Shanghai 201203 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Life Science and Technology, ShanghaiTech University , Shanghai 201210 , China","institution_ids":["https://openalex.org/I30809798"]},{"raw_affiliation_string":"State Key Laboratory of Genetic Engineering, Center for Evolutionary Biology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University , Shanghai 200438 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4391768242"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022155426","https://openalex.org/A5032774298","https://openalex.org/A5100419052"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I24943067","https://openalex.org/I30809798","https://openalex.org/I4210096013","https://openalex.org/I4210127074","https://openalex.org/I4391768242"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6809,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.84828848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"51","issue":"D1","first_page":"D1109","last_page":"D1116"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7520575523376465},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6324590444564819},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6306200623512268},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.6111233830451965},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5278698801994324},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.4436846971511841},{"id":"https://openalex.org/keywords/cancer-genome-sequencing","display_name":"Cancer genome sequencing","score":0.44213801622390747},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.4375148415565491},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.334541916847229},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27952975034713745},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.23636212944984436},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22753185033798218},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.07447811961174011}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7520575523376465},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6324590444564819},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6306200623512268},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6111233830451965},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5278698801994324},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4436846971511841},{"id":"https://openalex.org/C205270622","wikidata":"https://www.wikidata.org/wiki/Q17082639","display_name":"Cancer genome sequencing","level":5,"score":0.44213801622390747},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.4375148415565491},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.334541916847229},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27952975034713745},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.23636212944984436},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22753185033798218},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.07447811961174011},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056914","descriptor_name":"Genomic Structural Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac905","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac905","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1109/48441527/gkac905.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36243989","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36243989","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825616","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825616","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac905","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac905","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1109/48441527/gkac905.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1051659124","display_name":null,"funder_award_id":"32030020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7059489686","display_name":null,"funder_award_id":"31961130380","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":79,"referenced_works":["https://openalex.org/W968676095","https://openalex.org/W1595360086","https://openalex.org/W1644197353","https://openalex.org/W1912672559","https://openalex.org/W1973067702","https://openalex.org/W2065817684","https://openalex.org/W2083870688","https://openalex.org/W2099085143","https://openalex.org/W2101071606","https://openalex.org/W2103017472","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2111350087","https://openalex.org/W2119180969","https://openalex.org/W2119582595","https://openalex.org/W2124429242","https://openalex.org/W2148523394","https://openalex.org/W2150506261","https://openalex.org/W2152956782","https://openalex.org/W2154397429","https://openalex.org/W2160344363","https://openalex.org/W2166657289","https://openalex.org/W2227356030","https://openalex.org/W2235737683","https://openalex.org/W2398498907","https://openalex.org/W2516804127","https://openalex.org/W2522993044","https://openalex.org/W2557610530","https://openalex.org/W2586231603","https://openalex.org/W2589834155","https://openalex.org/W2606675097","https://openalex.org/W2616090912","https://openalex.org/W2768402584","https://openalex.org/W2784788330","https://openalex.org/W2788228074","https://openalex.org/W2884001931","https://openalex.org/W2898942820","https://openalex.org/W2901303766","https://openalex.org/W2908721251","https://openalex.org/W2948024819","https://openalex.org/W2949062400","https://openalex.org/W2949884285","https://openalex.org/W2950121474","https://openalex.org/W2980636857","https://openalex.org/W2982254257","https://openalex.org/W2986448893","https://openalex.org/W2988655273","https://openalex.org/W2991764175","https://openalex.org/W2997001777","https://openalex.org/W2999074641","https://openalex.org/W3004909908","https://openalex.org/W3015850611","https://openalex.org/W3032034316","https://openalex.org/W3033728751","https://openalex.org/W3033870872","https://openalex.org/W3035278408","https://openalex.org/W3035437122","https://openalex.org/W3035442585","https://openalex.org/W3044594590","https://openalex.org/W3046227349","https://openalex.org/W3082341865","https://openalex.org/W3091245808","https://openalex.org/W3112600195","https://openalex.org/W3119240720","https://openalex.org/W3130788486","https://openalex.org/W3145355063","https://openalex.org/W3150461181","https://openalex.org/W3186235595","https://openalex.org/W3193581299","https://openalex.org/W3199243760","https://openalex.org/W3199307135","https://openalex.org/W3200374960","https://openalex.org/W4200597270","https://openalex.org/W4214821232","https://openalex.org/W4220704537","https://openalex.org/W4220801573","https://openalex.org/W4229070142","https://openalex.org/W4247053599","https://openalex.org/W6681987380"],"related_works":["https://openalex.org/W3215016332","https://openalex.org/W2239438762","https://openalex.org/W1491924329","https://openalex.org/W2522810657","https://openalex.org/W2940017713","https://openalex.org/W4247143869","https://openalex.org/W1972701998","https://openalex.org/W4379741085","https://openalex.org/W4232448247","https://openalex.org/W2985880923"],"abstract_inverted_index":{"Structural":[0],"variations":[1],"(SVs)":[2],"play":[3],"important":[4],"roles":[5],"in":[6,95,103,115,149],"human":[7,151],"evolution":[8],"and":[9,32,53,91,98,106,126,139,164],"diseases,":[10],"but":[11],"there":[12],"is":[13,171],"a":[14,47,157,165],"lack":[15],"of":[16,28,72,112,121,168],"data":[17,35,71],"resources":[18],"concerning":[19],"representative":[20,55],"samples,":[21,74],"especially":[22],"for":[23,50,144],"East":[24],"Asians.":[25],"Taking":[26],"advantage":[27],"both":[29,51,96],"next-generation":[30],"sequencing":[31,34,70,78,105],"third-generation":[33],"at":[36],"the":[37,42,146,150],"whole-genome":[38,69],"level,":[39],"we":[40],"developed":[41],"database":[43],"PGG.SV":[44,62,84,155,170],"to":[45,133],"provide":[46],"practical":[48],"platform":[49,132],"regionally":[52],"globally":[54],"structural":[56],"variants.":[57],"In":[58],"its":[59],"current":[60],"version,":[61],"archives":[63],"584":[64],"277":[65],"SVs":[66,88,102],"obtained":[67],"from":[68],"6048":[73],"including":[75],"1030":[76],"long-read":[77],"genomes":[79],"representing":[80],"177":[81],"global":[82],"populations.":[83],"provides":[85,156],"(i)":[86],"high-quality":[87],"with":[89],"fine-scale":[90],"precise":[92],"genomic":[93],"locations":[94],"GRCh37":[97],"GRCh38,":[99],"covering":[100],"underrepresented":[101],"existing":[104],"microarray":[107],"data;":[108],"(ii)":[109],"hierarchical":[110],"estimation":[111],"SV":[113,147],"prevalence":[114],"geographical":[116],"populations;":[117],"(iii)":[118],"informative":[119],"annotations":[120],"SV-related":[122],"genes,":[123],"potential":[124],"functions":[125],"clinical":[127],"effects;":[128],"(iv)":[129],"an":[130],"analysis":[131,162],"facilitate":[134],"SV-based":[135],"case-control":[136],"association":[137],"studies":[138],"(v)":[140],"various":[141],"visualization":[142],"tools":[143,163],"understanding":[145],"structures":[148],"genome.":[152],"Taken":[153],"together,":[154],"user-friendly":[158],"online":[159],"interface,":[160],"easy-to-use":[161],"detailed":[166],"presentation":[167],"results.":[169],"freely":[172],"accessible":[173],"via":[174],"https://www.biosino.org/pggsv.":[175]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
