{"id":"https://openalex.org/W4306353463","doi":"https://doi.org/10.1093/nar/gkac893","title":"ChromLoops: a comprehensive database for specific protein-mediated chromatin loops in diverse organisms","display_name":"ChromLoops: a comprehensive database for specific protein-mediated chromatin loops in diverse organisms","publication_year":2022,"publication_date":"2022-10-16","ids":{"openalex":"https://openalex.org/W4306353463","doi":"https://doi.org/10.1093/nar/gkac893","pmid":"https://pubmed.ncbi.nlm.nih.gov/36243984"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac893","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac893","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D57/48440972/gkac893.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D57/48440972/gkac893.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008485039","display_name":"Qiangwei Zhou","orcid":"https://orcid.org/0000-0002-7948-177X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiangwei Zhou","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-7948-177X","affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101298760","display_name":"Cheng Sheng","orcid":"https://orcid.org/0009-0003-4919-7924"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Cheng","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102200785","display_name":"Shanshan Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shanshan Zheng","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069179010","display_name":"Zhenji Wang","orcid":"https://orcid.org/0009-0006-6975-6078"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenji Wang","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028460436","display_name":"Pengpeng Guan","orcid":"https://orcid.org/0000-0002-9137-8249"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengpeng Guan","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056173690","display_name":"Zhixian Zhu","orcid":"https://orcid.org/0000-0003-1136-8639"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixian Zhu","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019678493","display_name":"Xingyu Huang","orcid":"https://orcid.org/0000-0002-6407-7088"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingyu Huang","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100753495","display_name":"Cong Zhou","orcid":"https://orcid.org/0000-0002-6938-4685"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cong Zhou","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100404163","display_name":"Guoliang Li","orcid":"https://orcid.org/0000-0003-1601-6640"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guoliang Li","raw_affiliation_strings":["Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0003-1601-6640","affiliations":[{"raw_affiliation_string":"Agricultural Bioinformatics Key Laboratory of Hubei Province, Hubei Engineering Technology Research Center of Agricultural Big Data, Key Laboratory of Smart Farming for Agricultural Animals, 3D Genomics Research Center, College of Informatics, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University , Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5100404163"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.0789,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.87805988,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"51","issue":"D1","first_page":"D57","last_page":"D69"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9454250335693359},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7092223167419434},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5391882061958313},{"id":"https://openalex.org/keywords/escherichia-coli-proteins","display_name":"Escherichia coli Proteins","score":0.4367954134941101},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4216127395629883},{"id":"https://openalex.org/keywords/bacterial-protein","display_name":"Bacterial protein","score":0.39603736996650696},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3854169249534607},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.33830684423446655},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3214791417121887},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.1986445188522339}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9454250335693359},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7092223167419434},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5391882061958313},{"id":"https://openalex.org/C2908821069","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli Proteins","level":4,"score":0.4367954134941101},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4216127395629883},{"id":"https://openalex.org/C2993175405","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Bacterial protein","level":3,"score":0.39603736996650696},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3854169249534607},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33830684423446655},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3214791417121887},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1986445188522339},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac893","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac893","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D57/48440972/gkac893.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36243984","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36243984","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825580","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825580","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac893","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac893","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D57/48440972/gkac893.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1203807175","display_name":null,"funder_award_id":"2021YFC2701201","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3975817520","display_name":null,"funder_award_id":"31970590","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":89,"referenced_works":["https://openalex.org/W1980383179","https://openalex.org/W1993440360","https://openalex.org/W1999368908","https://openalex.org/W2000798782","https://openalex.org/W2010846728","https://openalex.org/W2011463791","https://openalex.org/W2018838463","https://openalex.org/W2033201031","https://openalex.org/W2043398720","https://openalex.org/W2048263136","https://openalex.org/W2090037139","https://openalex.org/W2091417752","https://openalex.org/W2101600343","https://openalex.org/W2102619694","https://openalex.org/W2118258530","https://openalex.org/W2121284504","https://openalex.org/W2121906867","https://openalex.org/W2122732537","https://openalex.org/W2142433690","https://openalex.org/W2145144631","https://openalex.org/W2154726187","https://openalex.org/W2158485828","https://openalex.org/W2176574121","https://openalex.org/W2183091920","https://openalex.org/W2195190137","https://openalex.org/W2195359644","https://openalex.org/W2316537321","https://openalex.org/W2338408645","https://openalex.org/W2507445921","https://openalex.org/W2537679995","https://openalex.org/W2553838260","https://openalex.org/W2557097554","https://openalex.org/W2606675097","https://openalex.org/W2614144400","https://openalex.org/W2750857187","https://openalex.org/W2760366406","https://openalex.org/W2763836527","https://openalex.org/W2770300814","https://openalex.org/W2774297138","https://openalex.org/W2792944991","https://openalex.org/W2890965399","https://openalex.org/W2896719374","https://openalex.org/W2898789672","https://openalex.org/W2901303766","https://openalex.org/W2905183150","https://openalex.org/W2910305771","https://openalex.org/W2914398292","https://openalex.org/W2946098668","https://openalex.org/W2951856336","https://openalex.org/W2952947531","https://openalex.org/W2955816935","https://openalex.org/W2963347990","https://openalex.org/W2964674548","https://openalex.org/W2982376737","https://openalex.org/W2983759518","https://openalex.org/W2988126442","https://openalex.org/W2989837622","https://openalex.org/W2990435446","https://openalex.org/W2993022331","https://openalex.org/W3007150393","https://openalex.org/W3008725968","https://openalex.org/W3008828407","https://openalex.org/W3020614442","https://openalex.org/W3046151504","https://openalex.org/W3092353457","https://openalex.org/W3094523844","https://openalex.org/W3094642951","https://openalex.org/W3096002368","https://openalex.org/W3108737349","https://openalex.org/W3109279595","https://openalex.org/W3177078124","https://openalex.org/W3201305288","https://openalex.org/W3201334827","https://openalex.org/W3205605155","https://openalex.org/W3207672631","https://openalex.org/W3209761205","https://openalex.org/W3212334377","https://openalex.org/W3212477617","https://openalex.org/W3215804303","https://openalex.org/W3216065158","https://openalex.org/W4220938426","https://openalex.org/W4221102522","https://openalex.org/W4281976431","https://openalex.org/W4282023856","https://openalex.org/W4290973104","https://openalex.org/W6724876019","https://openalex.org/W6769383597","https://openalex.org/W6770120275","https://openalex.org/W6770304583"],"related_works":["https://openalex.org/W2157851911","https://openalex.org/W2464119888","https://openalex.org/W17901134","https://openalex.org/W1543665493","https://openalex.org/W2938731710","https://openalex.org/W2166430205","https://openalex.org/W3083885438","https://openalex.org/W3126883736","https://openalex.org/W4395464470","https://openalex.org/W2101697700"],"abstract_inverted_index":{"Chromatin":[0],"loops":[1,14],"(or":[2],"chromatin":[3,9,13,41,78,101,110,143,171],"interactions)":[4],"are":[5,66],"important":[6],"elements":[7,120],"of":[8,12],"structures.":[10],"Disruption":[11],"is":[15],"associated":[16],"with":[17,109,113,141,154],"many":[18],"diseases,":[19],"such":[20,117],"as":[21,118],"cancer":[22,158],"and":[23,31,52,58,61,75,88,94,106,123,130,132,179],"polydactyly.":[24],"A":[25],"few":[26],"methods,":[27],"including":[28],"ChIA-PET,":[29,50,86],"HiChIP":[30,51,87],"PLAC-Seq,":[32],"have":[33],"been":[34],"proposed":[35],"to":[36,56,176],"detect":[37],"high-resolution,":[38],"specific":[39,76],"protein-mediated":[40,77],"loops.":[42,102],"With":[43],"rapid":[44],"progress":[45],"in":[46,145,157,174],"3D":[47],"genomic":[48],"research,":[49],"PLAC-Seq":[53,89],"datasets":[54,65,90],"continue":[55],"accumulate,":[57],"effective":[59],"collection":[60],"processing":[62],"for":[63,169],"these":[64],"urgently":[67],"needed.":[68],"Here,":[69],"we":[70,138,151],"developed":[71],"a":[72,166],"comprehensive,":[73],"multispecies":[74],"loop":[79,111],"database":[80],"(ChromLoops,":[81],"https://3dgenomics.hzau.edu.cn/chromloops),":[82],"which":[83],"integrated":[84],"1030":[85],"from":[91],"13":[92],"species,":[93],"documented":[95],"1":[96],"491":[97],"416":[98],"813":[99],"high-quality":[100],"We":[103,160],"annotated":[104],"genes":[105,140,153],"regions":[107],"overlapping":[108],"anchors":[112],"rich":[114],"functional":[115],"annotations,":[116],"regulatory":[119],"(enhancers,":[121],"super-enhancers":[122],"silencers),":[124],"variations":[125],"(common":[126],"SNPs,":[127],"somatic":[128],"SNPs":[129],"eQTLs),":[131],"transcription":[133],"factor":[134],"binding":[135],"sites.":[136],"Moreover,":[137],"identified":[139,152],"high-frequency":[142,155],"interactions":[144,156],"the":[146],"collected":[147],"species.":[148],"In":[149],"particular,":[150],"samples.":[159],"hope":[161],"that":[162],"ChromLoops":[163],"will":[164],"provide":[165],"new":[167],"platform":[168],"studying":[170],"interaction":[172],"regulation":[173],"relation":[175],"biological":[177],"processes":[178],"disease.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
