{"id":"https://openalex.org/W4306353176","doi":"https://doi.org/10.1093/nar/gkac874","title":"Aquila: a spatial omics database and analysis platform","display_name":"Aquila: a spatial omics database and analysis platform","publication_year":2022,"publication_date":"2022-10-16","ids":{"openalex":"https://openalex.org/W4306353176","doi":"https://doi.org/10.1093/nar/gkac874","pmid":"https://pubmed.ncbi.nlm.nih.gov/36243967"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac874","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac874","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D827/48440785/gkac874.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D827/48440785/gkac874.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102836310","display_name":"Yi-Min Zheng","orcid":"https://orcid.org/0000-0002-0394-9735"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yimin Zheng","raw_affiliation_strings":["Cancer Centre, University of Macau , Taipa 999078, Macau SAR","Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR"],"raw_orcid":"https://orcid.org/0000-0002-0394-9735","affiliations":[{"raw_affiliation_string":"Cancer Centre, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052881022","display_name":"Yitian Chen","orcid":"https://orcid.org/0000-0002-6159-8160"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yitian Chen","raw_affiliation_strings":["Cancer Centre, University of Macau , Taipa 999078, Macau SAR","Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR"],"raw_orcid":"https://orcid.org/0000-0002-6159-8160","affiliations":[{"raw_affiliation_string":"Cancer Centre, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100776872","display_name":"Xianting Ding","orcid":"https://orcid.org/0000-0002-1549-3499"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianting Ding","raw_affiliation_strings":["Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University , Shanghai 200240 , China"],"raw_orcid":"https://orcid.org/0000-0002-1549-3499","affiliations":[{"raw_affiliation_string":"Institute for Personalized Medicine, School of Biomedical Engineering, Shanghai Jiao Tong University , Shanghai 200240 , China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023829717","display_name":"Koon Ho Wong","orcid":"https://orcid.org/0000-0002-9264-5118"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Koon Ho Wong","raw_affiliation_strings":["Cancer Centre, University of Macau , Taipa 999078, Macau SAR","Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR"],"raw_orcid":"https://orcid.org/0000-0002-9264-5118","affiliations":[{"raw_affiliation_string":"Cancer Centre, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021671441","display_name":"Edwin Cheung","orcid":"https://orcid.org/0000-0001-8034-2833"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":true,"raw_author_name":"Edwin Cheung","raw_affiliation_strings":["Cancer Centre, University of Macau , Taipa 999078, Macau SAR","Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR"],"raw_orcid":"https://orcid.org/0000-0001-8034-2833","affiliations":[{"raw_affiliation_string":"Cancer Centre, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Centre for Precision Medicine Research and Training, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"Faculty of Health Sciences, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]},{"raw_affiliation_string":"MoE Frontiers Science Center for Precision Oncology, University of Macau , Taipa 999078, Macau SAR","institution_ids":["https://openalex.org/I204512498"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021671441"],"corresponding_institution_ids":["https://openalex.org/I204512498"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6853,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.91286515,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"51","issue":"D1","first_page":"D827","last_page":"D834"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9725000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7057109475135803},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.6231666207313538},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5320889353752136},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5011725425720215},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4790414571762085},{"id":"https://openalex.org/keywords/spatial-database","display_name":"Spatial database","score":0.4627755880355835},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.4172329902648926},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40842100977897644},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3630281090736389},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36134496331214905},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.289404034614563},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09607300162315369}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7057109475135803},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.6231666207313538},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5320889353752136},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5011725425720215},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4790414571762085},{"id":"https://openalex.org/C203689450","wikidata":"https://www.wikidata.org/wiki/Q2302053","display_name":"Spatial database","level":3,"score":0.4627755880355835},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.4172329902648926},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40842100977897644},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3630281090736389},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36134496331214905},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.289404034614563},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09607300162315369},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac874","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac874","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D827/48440785/gkac874.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36243967","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36243967","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825501","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825501","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac874","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac874","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D827/48440785/gkac874.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1370286428","display_name":null,"funder_award_id":"MYRG2018-00033-FHS","funder_id":"https://openalex.org/F4320322841","funder_display_name":"Universidade de Macau"},{"id":"https://openalex.org/G195657713","display_name":null,"funder_award_id":"0137/2020/A3","funder_id":"https://openalex.org/F4320315893","funder_display_name":"VNU Science and Technology Development Fund"},{"id":"https://openalex.org/G3427416302","display_name":null,"funder_award_id":"0011/2019/AKP","funder_id":"https://openalex.org/F4320315893","funder_display_name":"VNU Science and Technology Development Fund"},{"id":"https://openalex.org/G3588101953","display_name":null,"funder_award_id":"MYRG2020-00100-FHS","funder_id":"https://openalex.org/F4320322841","funder_display_name":"Universidade de Macau"}],"funders":[{"id":"https://openalex.org/F4320315893","display_name":"VNU Science and Technology Development Fund","ror":"https://ror.org/044vr6g03"},{"id":"https://openalex.org/F4320322841","display_name":"Universidade de Macau","ror":"https://ror.org/01r4q9n85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1597325125","https://openalex.org/W1991281977","https://openalex.org/W1995875735","https://openalex.org/W2035479247","https://openalex.org/W2049763161","https://openalex.org/W2052611179","https://openalex.org/W2053129129","https://openalex.org/W2131681506","https://openalex.org/W2136642200","https://openalex.org/W2164998314","https://openalex.org/W2399767476","https://openalex.org/W2471536144","https://openalex.org/W2743344672","https://openalex.org/W2800392236","https://openalex.org/W2803942859","https://openalex.org/W2809368942","https://openalex.org/W2832881433","https://openalex.org/W2897249806","https://openalex.org/W2922020904","https://openalex.org/W2923300855","https://openalex.org/W2949238013","https://openalex.org/W2953036966","https://openalex.org/W2972445800","https://openalex.org/W2979301772","https://openalex.org/W2988665559","https://openalex.org/W2999681746","https://openalex.org/W3035965352","https://openalex.org/W3036371598","https://openalex.org/W3099559583","https://openalex.org/W3099768174","https://openalex.org/W3099878876","https://openalex.org/W3100967665","https://openalex.org/W3106188259","https://openalex.org/W3112563877","https://openalex.org/W3134482219","https://openalex.org/W3141776272","https://openalex.org/W3145026833","https://openalex.org/W3167327839","https://openalex.org/W3176766013","https://openalex.org/W3191029526","https://openalex.org/W3212135550","https://openalex.org/W4210583065","https://openalex.org/W4220765701","https://openalex.org/W4225381889","https://openalex.org/W4229021644","https://openalex.org/W4229033508","https://openalex.org/W6685764666","https://openalex.org/W6713280873","https://openalex.org/W6770661763"],"related_works":["https://openalex.org/W4251016002","https://openalex.org/W2122098189","https://openalex.org/W2019468830","https://openalex.org/W2358133679","https://openalex.org/W186585275","https://openalex.org/W2359471660","https://openalex.org/W2377819299","https://openalex.org/W2350384810","https://openalex.org/W2547353776","https://openalex.org/W1983673890"],"abstract_inverted_index":{"Spatial":[0],"omics":[1,38,55,95,133],"is":[2,26,188],"a":[3,27,47,140,155,173,184],"rapidly":[4],"evolving":[5],"approach":[6],"for":[7,31,50,135,163],"exploring":[8],"tissue":[9],"microenvironment":[10],"and":[11,35,52,69,80,84,87,107,118,137,142,157,178],"cellular":[12],"networks":[13],"by":[14],"integrating":[15],"spatial":[16,37,54,78,94,102,105,120,132,185],"knowledge":[17],"with":[18],"transcript":[19,177],"or":[20],"protein":[21,179],"expression":[22,106,180],"information.":[23],"However,":[24],"there":[25],"lack":[28],"of":[29,67,93,109],"databases":[30],"users":[32,114,127,165],"to":[33,166],"access":[34,167],"analyze":[36],"data.":[39,56],"To":[40],"address":[41],"this":[42],"limitation,":[43],"we":[44],"developed":[45],"Aquila,":[46],"comprehensive":[48],"platform":[49],"managing":[51],"analyzing":[53],"Aquila":[57,90,111,146,171,187],"contains":[58],"107":[59],"datasets":[60],"from":[61,77,183],"30":[62],"diseases,":[63],"including":[64],"6500+":[65],"regions":[66],"interest,":[68],"15.7":[70],"million":[71],"cells.":[72],"The":[73],"database":[74],"covers":[75],"studies":[76],"transcriptome":[79],"proteome":[81],"analyses,":[82],"2D":[83],"3D":[85],"experiments,":[86],"different":[88],"technologies.":[89],"provides":[91,172],"visualization":[92,136],"data":[96,134],"in":[97,139,181],"multiple":[98],"formats":[99],"such":[100],"as":[101,150],"cell":[103],"distribution,":[104],"co-localization":[108],"markers.":[110],"also":[112],"lets":[113],"perform":[115],"many":[116],"basic":[117],"advanced":[119],"analyses":[121],"on":[122,154],"any":[123],"dataset.":[124],"In":[125],"addition,":[126],"can":[128,147],"submit":[129],"their":[130],"own":[131],"analysis":[138],"safe":[141],"secure":[143],"environment.":[144],"Finally,":[145],"be":[148],"installed":[149],"an":[151],"individual":[152],"app":[153],"desktop":[156],"offers":[158],"the":[159,168],"RESTful":[160],"API":[161],"service":[162],"power":[164],"database.":[169],"Overall,":[170],"detailed":[174],"insight":[175],"into":[176],"tissues":[182],"perspective.":[186],"available":[189],"at":[190],"https://aquila.cheunglab.org.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
