{"id":"https://openalex.org/W4306353201","doi":"https://doi.org/10.1093/nar/gkac872","title":"PertOrg 1.0: a comprehensive resource of multilevel alterations induced in model organisms by <i>in vivo</i> genetic perturbation","display_name":"PertOrg 1.0: a comprehensive resource of multilevel alterations induced in model organisms by <i>in vivo</i> genetic perturbation","publication_year":2022,"publication_date":"2022-09-28","ids":{"openalex":"https://openalex.org/W4306353201","doi":"https://doi.org/10.1093/nar/gkac872","pmid":"https://pubmed.ncbi.nlm.nih.gov/36243973"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac872","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac872","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1094/48440998/gkac872.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1094/48440998/gkac872.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052797122","display_name":"Zhaoyu Zhai","orcid":"https://orcid.org/0000-0002-2983-6149"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyu Zhai","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050674310","display_name":"Xuelu Zhang","orcid":"https://orcid.org/0000-0001-6988-2257"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuelu Zhang","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008486270","display_name":"Lu Zhou","orcid":"https://orcid.org/0000-0002-6704-2147"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Zhou","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083028718","display_name":"Zhewei Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhewei Lin","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015037814","display_name":"Ni Kuang","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ni Kuang","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100429943","display_name":"Qiang Li","orcid":"https://orcid.org/0000-0002-1686-9005"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Li","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052217053","display_name":"Qinfeng Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinfeng Ma","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077499685","display_name":"Haodong Tao","orcid":"https://orcid.org/0000-0002-0743-4499"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haodong Tao","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":"https://orcid.org/0000-0002-0743-4499","affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069536090","display_name":"Jieya Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jieya Gao","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006028337","display_name":"Shiyong Ma","orcid":"https://orcid.org/0000-0003-2911-3722"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiyong Ma","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045047208","display_name":"Jianbo Pan","orcid":"https://orcid.org/0000-0001-6014-8160"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianbo Pan","raw_affiliation_strings":["Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China"],"raw_orcid":"https://orcid.org/0000-0001-6014-8160","affiliations":[{"raw_affiliation_string":"Center for Novel Target and Therapeutic Intervention, Institute of Life Sciences, Chongqing Medical University , Chongqing \u00a0400016, China","institution_ids":["https://openalex.org/I87780372"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045047208"],"corresponding_institution_ids":["https://openalex.org/I87780372"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.3358,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54629022,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"51","issue":"D1","first_page":"D1094","last_page":"D1101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8963434100151062},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.8288456201553345},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6800047159194946},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.6116148829460144},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6105144619941711},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5885510444641113},{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.5459538698196411},{"id":"https://openalex.org/keywords/gene-knockdown","display_name":"Gene knockdown","score":0.5415298342704773},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5075136423110962},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4587453007698059},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.41355836391448975},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.32754960656166077}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8963434100151062},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.8288456201553345},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6800047159194946},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.6116148829460144},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6105144619941711},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5885510444641113},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.5459538698196411},{"id":"https://openalex.org/C173396325","wikidata":"https://www.wikidata.org/wiki/Q1501275","display_name":"Gene knockdown","level":3,"score":0.5415298342704773},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5075136423110962},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4587453007698059},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.41355836391448975},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.32754960656166077}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023421","descriptor_name":"Models, Animal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030781","descriptor_name":"Organisms, Genetically Modified","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030781","descriptor_name":"Organisms, Genetically Modified","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030781","descriptor_name":"Organisms, Genetically Modified","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac872","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac872","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1094/48440998/gkac872.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36243973","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36243973","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825601","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825601","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac872","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac872","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1094/48440998/gkac872.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2303740245","display_name":null,"funder_award_id":"82104063","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322595","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1991323605","https://openalex.org/W1993178531","https://openalex.org/W2100239923","https://openalex.org/W2107580398","https://openalex.org/W2118258530","https://openalex.org/W2130410032","https://openalex.org/W2138207763","https://openalex.org/W2146512944","https://openalex.org/W2173732482","https://openalex.org/W2179438025","https://openalex.org/W2231414434","https://openalex.org/W2410020305","https://openalex.org/W2466314544","https://openalex.org/W2768977980","https://openalex.org/W2782454362","https://openalex.org/W2887450160","https://openalex.org/W2891517856","https://openalex.org/W2895456557","https://openalex.org/W2931036699","https://openalex.org/W2951912016","https://openalex.org/W2964849163","https://openalex.org/W2979799397","https://openalex.org/W2984472267","https://openalex.org/W2989362889","https://openalex.org/W3096828292","https://openalex.org/W3102588302","https://openalex.org/W3102840277","https://openalex.org/W3112600195","https://openalex.org/W3147234347","https://openalex.org/W3164692211","https://openalex.org/W3175752499","https://openalex.org/W3202248730","https://openalex.org/W4205247356","https://openalex.org/W4221065117","https://openalex.org/W4225343266","https://openalex.org/W4237381349","https://openalex.org/W4241872665","https://openalex.org/W6719957963","https://openalex.org/W6770777444","https://openalex.org/W6797786779"],"related_works":["https://openalex.org/W4247273247","https://openalex.org/W3146618441","https://openalex.org/W2331275800","https://openalex.org/W3094265954","https://openalex.org/W1976510917","https://openalex.org/W2772937286","https://openalex.org/W1971124177","https://openalex.org/W2102579905","https://openalex.org/W3040723738","https://openalex.org/W2563598809"],"abstract_inverted_index":{"Genetically":[0],"modified":[1],"organisms":[2],"(GMOs)":[3],"can":[4,177],"be":[5,184],"generated":[6],"to":[7,20,40,118,173],"model":[8,78],"human":[9],"genetic":[10,69],"disease":[11,14,29,198],"or":[12],"plant":[13],"resistance,":[15],"and":[16,23,31,53,62,74,83,90,110,115,136,150,161,166,197],"they":[17],"have":[18],"contributed":[19],"the":[21,179,190],"exploration":[22,191],"understanding":[24],"of":[25,48,140,192],"gene":[26,141,193],"function,":[27],"physiology,":[28],"onset":[30],"drug":[32],"target":[33],"discovery.":[34],"Here,":[35],"PertOrg":[36,181],"(http://www.inbirg.com/pertorg/)":[37],"was":[38],"introduced":[39],"provide":[41],"multilevel":[42],"alterations":[43,152],"in":[44,67,76,124,189],"GMOs.":[45],"Raw":[46],"data":[47,107],"58":[49],"707":[50],"transcriptome":[51,86],"profiles":[52,87],"associated":[54],"information,":[55],"such":[56],"as":[57,138],"phenotypic":[58,151],"alterations,":[59],"were":[60,93,108,134,153,164,171],"collected":[61],"curated":[63],"from":[64,88],"studies":[65,170],"involving":[66],"vivo":[68],"perturbation":[70,92],"(e.g.":[71],"knockdown,":[72],"knockout":[73],"overexpression)":[75],"eight":[77],"organisms,":[79],"including":[80,100],"mouse,":[81],"rat":[82],"zebrafish.":[84],"The":[85,105],"before":[89],"after":[91],"organized":[94],"into":[95],"10":[96],"116":[97],"comparison":[98],"datasets,":[99],"122":[101],"single-cell":[102],"RNA-seq":[103],"datasets.":[104],"raw":[106],"checked":[109],"analysed":[111],"using":[112],"widely":[113],"accepted":[114],"standardized":[116],"pipelines":[117],"identify":[119],"differentially":[120],"expressed":[121],"genes":[122],"(DEGs)":[123],"perturbed":[125],"organisms.":[126],"As":[127],"a":[128,185],"result,":[129],"8":[130],"644":[131],"148":[132],"DEGs":[133],"identified":[135],"deposited":[137],"signatures":[139],"perturbations.":[142],"Downstream":[143],"functional":[144],"enrichment":[145],"analysis,":[146],"cell":[147],"type":[148],"analysis":[149],"also":[154],"provided":[155],"when":[156],"available.":[157],"Multiple":[158],"search":[159],"methods":[160],"analytical":[162],"tools":[163],"created":[165],"implemented.":[167],"Furthermore,":[168],"case":[169],"presented":[172],"demonstrate":[174],"how":[175],"users":[176],"utilize":[178],"database.":[180],"1.0":[182],"will":[183],"valuable":[186],"resource":[187],"aiding":[188],"functions,":[194],"biological":[195],"processes":[196],"models.":[199]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2022-10-16T00:00:00"}
