{"id":"https://openalex.org/W4304117487","doi":"https://doi.org/10.1093/nar/gkac868","title":"MiMeDB: the Human Microbial Metabolome Database","display_name":"MiMeDB: the Human Microbial Metabolome Database","publication_year":2022,"publication_date":"2022-10-10","ids":{"openalex":"https://openalex.org/W4304117487","doi":"https://doi.org/10.1093/nar/gkac868","pmid":"https://pubmed.ncbi.nlm.nih.gov/36215042"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac868","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac868","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D611/48440796/gkac868.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D611/48440796/gkac868.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003573061","display_name":"David S. Wishart","orcid":"https://orcid.org/0000-0002-3207-2434"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"David S Wishart","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","Department of Computing Science, University of Alberta , Edmonton, AB T6G 2E8, Canada","Department of Laboratory Medicine and Pathology, University of Alberta , Edmonton T6G 2B7, AB, Canada","Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta , Edmonton, AB T6G 2H7, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Department of Computing Science, University of Alberta , Edmonton, AB T6G 2E8, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Department of Laboratory Medicine and Pathology, University of Alberta , Edmonton T6G 2B7, AB, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Faculty of Pharmacy and Pharmaceutical Sciences, University of Alberta , Edmonton, AB T6G 2H7, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017496139","display_name":"Eponine Oler","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Eponine Oler","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073740364","display_name":"Harrison Peters","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Harrison Peters","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112537837","display_name":"AnChi Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"AnChi Guo","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006628590","display_name":"Sagan Girod","orcid":"https://orcid.org/0000-0002-8667-0907"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sagan Girod","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108472766","display_name":"Scott Han","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Scott Han","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015674144","display_name":"Sukanta Saha","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sukanta Saha","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","Department of Computing Science, University of Alberta , Edmonton, AB T6G 2E8, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Department of Computing Science, University of Alberta , Edmonton, AB T6G 2E8, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000221300","display_name":"Vicki W Lui","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vicki\u00a0W Lui","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058296235","display_name":"Marcia LeVatte","orcid":"https://orcid.org/0000-0002-5657-6661"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Marcia LeVatte","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085093503","display_name":"Vasuk Gautam","orcid":"https://orcid.org/0000-0002-9204-1963"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vasuk Gautam","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta , Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025091889","display_name":"Rima Kaddurah\u2010Daouk","orcid":"https://orcid.org/0000-0003-1858-5732"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rima Kaddurah-Daouk","raw_affiliation_strings":["Department of Medicine, Duke University School of Medicine , Durham, NC 27710, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Duke University School of Medicine , Durham, NC 27710, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018038329","display_name":"Naama Karu","orcid":"https://orcid.org/0000-0001-8005-0726"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I4210133171","display_name":"Centre for Human Drug Research","ror":"https://ror.org/044hshx49","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210133171"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Naama Karu","raw_affiliation_strings":["Leiden Academic Centre for Drug Research, Leiden University , Leiden\u00a02333 CC, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Leiden Academic Centre for Drug Research, Leiden University , Leiden\u00a02333 CC, The Netherlands","institution_ids":["https://openalex.org/I4210133171","https://openalex.org/I121797337"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5003573061"],"corresponding_institution_ids":["https://openalex.org/I154425047"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.9855,"has_fulltext":false,"cited_by_count":103,"citation_normalized_percentile":{"value":0.98531265,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"51","issue":"D1","first_page":"D611","last_page":"D620"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolome","display_name":"Metabolome","score":0.9201743006706238},{"id":"https://openalex.org/keywords/exposome","display_name":"Exposome","score":0.8803162574768066},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7823081016540527},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7483214139938354},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.7013628482818604},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7009384036064148},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.643987238407135},{"id":"https://openalex.org/keywords/human-health","display_name":"Human health","score":0.5996493101119995},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5226078629493713},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5038706660270691},{"id":"https://openalex.org/keywords/microbial-metabolism","display_name":"Microbial metabolism","score":0.44326668977737427},{"id":"https://openalex.org/keywords/microbial-ecology","display_name":"Microbial ecology","score":0.4241713583469391},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.42114073038101196},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.3343523144721985},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31655681133270264},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2525932192802429},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2462434470653534}],"concepts":[{"id":"https://openalex.org/C135870905","wikidata":"https://www.wikidata.org/wiki/Q903667","display_name":"Metabolome","level":3,"score":0.9201743006706238},{"id":"https://openalex.org/C119709500","wikidata":"https://www.wikidata.org/wiki/Q2142347","display_name":"Exposome","level":2,"score":0.8803162574768066},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7823081016540527},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7483214139938354},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.7013628482818604},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7009384036064148},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.643987238407135},{"id":"https://openalex.org/C2987857752","wikidata":"https://www.wikidata.org/wiki/Q12147","display_name":"Human health","level":2,"score":0.5996493101119995},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5226078629493713},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5038706660270691},{"id":"https://openalex.org/C101014631","wikidata":"https://www.wikidata.org/wiki/Q4889568","display_name":"Microbial metabolism","level":3,"score":0.44326668977737427},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.4241713583469391},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.42114073038101196},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3343523144721985},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31655681133270264},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2525932192802429},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2462434470653534},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkac868","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac868","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D611/48440796/gkac868.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36215042","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36215042","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825614","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825614","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_4105250","is_oa":true,"landing_page_url":"https://academic.oup.com/nar/article/51/D1/D611/6754917","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac868","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac868","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D611/48440796/gkac868.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1988104053","display_name":null,"funder_award_id":"1U19AG063744-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4304117487.pdf","grobid_xml":"https://content.openalex.org/works/W4304117487.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1934481644","https://openalex.org/W2020398205","https://openalex.org/W2021825126","https://openalex.org/W2036411298","https://openalex.org/W2077553363","https://openalex.org/W2103148772","https://openalex.org/W2107616906","https://openalex.org/W2131186249","https://openalex.org/W2154139219","https://openalex.org/W2159482845","https://openalex.org/W2159511040","https://openalex.org/W2168987491","https://openalex.org/W2169779482","https://openalex.org/W2297901344","https://openalex.org/W2302501749","https://openalex.org/W2498698309","https://openalex.org/W2548357532","https://openalex.org/W2558428302","https://openalex.org/W2622468178","https://openalex.org/W2740005242","https://openalex.org/W2749464300","https://openalex.org/W2767891136","https://openalex.org/W2897824824","https://openalex.org/W2915375909","https://openalex.org/W2950173838","https://openalex.org/W2986767149","https://openalex.org/W3006796998","https://openalex.org/W3099584915","https://openalex.org/W3107083588","https://openalex.org/W3211728852","https://openalex.org/W4206447491","https://openalex.org/W4240231372","https://openalex.org/W4280607179","https://openalex.org/W4281477116","https://openalex.org/W4294216483","https://openalex.org/W6770372785"],"related_works":["https://openalex.org/W2915830746","https://openalex.org/W1968369492","https://openalex.org/W4323565149","https://openalex.org/W4285794994","https://openalex.org/W2043102924","https://openalex.org/W2391004329","https://openalex.org/W2995607319","https://openalex.org/W2315403509","https://openalex.org/W3003899406","https://openalex.org/W1994105594"],"abstract_inverted_index":{"The":[0,104],"Human":[1],"Microbial":[2],"Metabolome":[3],"Database":[4],"(MiMeDB)":[5],"(https://mimedb.org)":[6],"is":[7,86,96,174,180,258],"a":[8],"comprehensive,":[9],"multi-omic,":[10],"microbiome":[11,55],"resource":[12],"that":[13,95,143,190,245,257],"connects:":[14],"(i)":[15],"microbes":[16,79],"to":[17,23,29,39,45,61,88,99,146,194,197,200,204,260],"microbial":[18,21,24,27,84,149],"genomes;":[19],"(ii)":[20],"genomes":[22],"metabolites;":[25],"(iii)":[26],"metabolites":[28,114,132,150,225],"the":[30,47,53,57,112,125,134,147,158,248],"human":[31,40,54,78,168],"exposome":[32,136],"and":[33,56,64,71,81,91,122,127,133,167,202,232,238],"(iv)":[34],"all":[35,111],"of":[36,50,177,250],"these":[37,117,131,172],"'omes'":[38],"health.":[41],"MiMeDB":[42,66,207,246],"was":[43],"established":[44],"consolidate":[46],"growing":[48],"body":[49],"data":[51,74,85,94,156,209],"connecting":[52],"chemicals":[58],"it":[59],"produces":[60],"both":[62],"health":[63,162,212],"disease.":[65],"contains":[67,208],"detailed":[68,108],"taxonomic,":[69],"microbiological":[70],"body-site":[72],"location":[73],"on":[75,210],"most":[76],"known":[77,113,159],"(bacteria":[80],"fungi).":[82],"This":[83],"linked":[87],"extensive":[89],"genomic":[90],"proteomic":[92],"sequence":[93],"closely":[97],"coupled":[98],"colourful":[100],"interactive":[101],"chromosomal":[102],"maps.":[103],"database":[105,189,256],"also":[106],"houses":[107],"information":[109,179],"about":[110,157],"generated":[115],"by":[116],"microbes,":[118,217],"their":[119],"structural,":[120],"chemical":[121],"spectral":[123],"properties,":[124],"reactions":[126],"enzymes":[128],"responsible":[129],"for":[130,171],"primary":[135],"sources":[137],"(food,":[138],"drug,":[139],"cosmetic,":[140],"pollutant,":[141],"etc.)":[142],"ultimately":[144],"lead":[145],"observed":[148],"in":[151,182],"humans.":[152],"Additional,":[153],"extensively":[154],"referenced":[155],"or":[160,214,226,253],"presumptive":[161],"effects,":[163],"measured":[164],"biosample":[165],"concentrations":[166],"protein":[169],"targets":[170],"compounds":[173],"provided.":[175],"All":[176],"this":[178],"housed":[181],"richly":[183],"annotated,":[184],"highly":[185],"interactive,":[186],"visually":[187],"pleasing":[188],"has":[191],"been":[192],"designed":[193],"be":[195],"easy":[196,199,203],"search,":[198],"browse":[201],"navigate.":[205],"Currently":[206],"626":[211],"effects":[213],"bioactivities,":[215],"1904":[216],"3112":[218],"references,":[219],"22":[220],"054":[221],"reactions,":[222],"24":[223],"254":[224],"exposure":[227],"chemicals,":[228],"648":[229],"861":[230],"MS":[231],"NMR":[233],"spectra,":[234],"6.4":[235],"million":[236],"genes":[237],"7.6":[239],"billion":[240],"DNA":[241],"bases.":[242],"We":[243],"believe":[244],"represents":[247],"kind":[249],"integrated,":[251],"multi-omic":[252,263],"systems":[254],"biology":[255],"needed":[259],"enable":[261],"comprehensive":[262],"integration.":[264]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":41},{"year":2024,"cited_by_count":35},{"year":2023,"cited_by_count":16}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
