{"id":"https://openalex.org/W4300690536","doi":"https://doi.org/10.1093/nar/gkac851","title":"<i>microbioTA</i>: an atlas of the microbiome in multiple disease tissues of <i>Homo sapiens</i> and <i>Mus musculus</i>","display_name":"<i>microbioTA</i>: an atlas of the microbiome in multiple disease tissues of <i>Homo sapiens</i> and <i>Mus musculus</i>","publication_year":2022,"publication_date":"2022-10-03","ids":{"openalex":"https://openalex.org/W4300690536","doi":"https://doi.org/10.1093/nar/gkac851","pmid":"https://pubmed.ncbi.nlm.nih.gov/36189892"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkac851","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac851","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1345/48441256/gkac851.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1345/48441256/gkac851.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089310182","display_name":"Ping Wang","orcid":"https://orcid.org/0000-0003-4451-1585"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Wang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":"https://orcid.org/0000-0003-4451-1585","affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083495525","display_name":"Sainan Zhang","orcid":"https://orcid.org/0000-0001-7258-4592"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sainan Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","Department of Anatomy, College of Basic Medical Sciences, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"Department of Anatomy, College of Basic Medical Sciences, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051143044","display_name":"Guoyou He","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoyou He","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064469430","display_name":"Meiyu Du","orcid":"https://orcid.org/0000-0001-7784-1308"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meiyu Du","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051745695","display_name":"Changlu Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changlu Qi","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103174663","display_name":"Ruyue Liu","orcid":"https://orcid.org/0000-0001-6122-7733"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruyue Liu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359168","display_name":"Siyuan Zhang","orcid":"https://orcid.org/0000-0002-1307-2869"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyuan Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","Department of Anatomy, College of Basic Medical Sciences, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"Department of Anatomy, College of Basic Medical Sciences, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052382857","display_name":"Liang Cheng","orcid":"https://orcid.org/0000-0002-6665-6710"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liang Cheng","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","NHC Key Laboratory of Molecular Probes and Targeted Diagnosis and Therapy, Harbin Medical University , Harbin \u00a0150028, Heilongjiang , China"],"raw_orcid":"https://orcid.org/0000-0002-6665-6710","affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin \u00a0150081, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"NHC Key Laboratory of Molecular Probes and Targeted Diagnosis and Therapy, Harbin Medical University , Harbin \u00a0150028, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101423680","display_name":"Lei Shi","orcid":"https://orcid.org/0000-0002-1913-8355"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Shi","raw_affiliation_strings":["NHC Key Laboratory of Molecular Probes and Targeted Diagnosis and Therapy, Harbin Medical University , Harbin \u00a0150028, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NHC Key Laboratory of Molecular Probes and Targeted Diagnosis and Therapy, Harbin Medical University , Harbin \u00a0150028, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100445886","display_name":"Xue Zhang","orcid":"https://orcid.org/0009-0004-0249-0581"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xue Zhang","raw_affiliation_strings":["McKusick-Zhang Center for Genetic Medicine, State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College , Beijing \u00a0100005, China","NHC Key Laboratory of Molecular Probes and Targeted Diagnosis and Therapy, Harbin Medical University , Harbin \u00a0150028, Heilongjiang , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McKusick-Zhang Center for Genetic Medicine, State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College , Beijing \u00a0100005, China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"NHC Key Laboratory of Molecular Probes and Targeted Diagnosis and Therapy, Harbin Medical University , Harbin \u00a0150028, Heilongjiang , China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5052382857","https://openalex.org/A5100445886","https://openalex.org/A5101423680"],"corresponding_institution_ids":["https://openalex.org/I156144747","https://openalex.org/I200296433"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.7359,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.84904203,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"51","issue":"D1","first_page":"D1345","last_page":"D1352"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9805999994277954,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.8789886236190796},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.824204683303833},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.7161158323287964},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6819869875907898},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6435112953186035},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.60714191198349},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.4688257873058319},{"id":"https://openalex.org/keywords/homo-sapiens","display_name":"Homo sapiens","score":0.44826021790504456},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4397059977054596},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4144768714904785},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.39781755208969116},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35800665616989136},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24226638674736023},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24219757318496704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18731772899627686}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.8789886236190796},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.824204683303833},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.7161158323287964},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6819869875907898},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6435112953186035},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.60714191198349},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.4688257873058319},{"id":"https://openalex.org/C2777938546","wikidata":"https://www.wikidata.org/wiki/Q5","display_name":"Homo sapiens","level":2,"score":0.44826021790504456},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4397059977054596},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4144768714904785},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.39781755208969116},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35800665616989136},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24226638674736023},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24219757318496704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18731772899627686},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkac851","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac851","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1345/48441256/gkac851.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:36189892","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36189892","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9825499","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9825499","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkac851","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkac851","pdf_url":"https://academic.oup.com/nar/article-pdf/51/D1/D1345/48441256/gkac851.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1140382451","display_name":null,"funder_award_id":"62222104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1849959260","display_name":null,"funder_award_id":"2019-15","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G724259906","display_name":null,"funder_award_id":"61871160","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8122999026","display_name":null,"funder_award_id":"62172130","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4300690536.pdf","grobid_xml":"https://content.openalex.org/works/W4300690536.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1558982506","https://openalex.org/W2016853666","https://openalex.org/W2087189381","https://openalex.org/W2097124003","https://openalex.org/W2116041602","https://openalex.org/W2133856765","https://openalex.org/W2159954944","https://openalex.org/W2222445509","https://openalex.org/W2316889938","https://openalex.org/W2341128841","https://openalex.org/W2345658906","https://openalex.org/W2558664061","https://openalex.org/W2599772516","https://openalex.org/W2600254651","https://openalex.org/W2769959144","https://openalex.org/W2883417272","https://openalex.org/W2902943436","https://openalex.org/W2903406988","https://openalex.org/W2913097383","https://openalex.org/W2920009718","https://openalex.org/W2947189704","https://openalex.org/W2948686297","https://openalex.org/W2951912016","https://openalex.org/W2967450000","https://openalex.org/W2972246166","https://openalex.org/W2979072963","https://openalex.org/W2990249310","https://openalex.org/W2990618091","https://openalex.org/W3010810358","https://openalex.org/W3093405588","https://openalex.org/W3138215020","https://openalex.org/W3159504416","https://openalex.org/W3187498389","https://openalex.org/W3201482214","https://openalex.org/W3211263674","https://openalex.org/W3213893926","https://openalex.org/W4225287557","https://openalex.org/W4255502791","https://openalex.org/W6633575141","https://openalex.org/W6648982606"],"related_works":["https://openalex.org/W1543301402","https://openalex.org/W1222064643","https://openalex.org/W1577826155","https://openalex.org/W4385414771","https://openalex.org/W2017030127","https://openalex.org/W3149998985","https://openalex.org/W2148304448","https://openalex.org/W2950027438","https://openalex.org/W1760389142","https://openalex.org/W3084871860"],"abstract_inverted_index":{"microbioTA":[0,165],"(http://bio-annotation.cn/microbiota)":[1],"was":[2],"constructed":[3],"to":[4,36,92,99,110,139,144,152,174],"provide":[5],"a":[6,89,141,167,194],"comprehensive,":[7],"user-friendly":[8,168],"resource":[9],"for":[10,196],"the":[11,74,77,94,101,108,131,154],"application":[12],"of":[13,28,76,103,157],"microbiome":[14,57,70,109,146,198],"data":[15,98,106,182],"from":[16,123,130,183],"diseased":[17],"tissues,":[18],"helping":[19],"users":[20,173],"improve":[21],"their":[22,162],"general":[23],"knowledge":[24],"and":[25,40,47,82,126,136,161,178],"deep":[26],"understanding":[27],"tissue-derived":[29],"microbes.":[30],"Various":[31],"microbes":[32,81],"have":[33],"been":[34],"found":[35],"colonize":[37],"cancer":[38,45,83,159],"tissues":[39,129,160,185],"play":[41],"important":[42],"roles":[43],"in":[44],"diagnoses":[46],"outcomes,":[48],"with":[49,187],"many":[50],"studies":[51],"focusing":[52],"on":[53],"developing":[54],"better":[55],"cancer-related":[56,69,197],"data.":[58],"However,":[59],"there":[60],"are":[61],"currently":[62],"no":[63],"independent,":[64],"comprehensive":[65],"open":[66],"resources":[67],"cataloguing":[68],"data,":[71],"which":[72,171],"limits":[73],"exploration":[75],"relationship":[78],"between":[79],"these":[80,138],"progression.":[84],"Given":[85],"this,":[86],"we":[87,117],"propose":[88],"new":[90],"strategy":[91],"re-align":[93,145],"existing":[95],"next-generation":[96],"sequencing":[97],"facilitate":[100],"mining":[102],"hidden":[104],"sequence":[105],"describing":[107],"maximize":[111],"available":[112,121],"resources.":[113],"To":[114],"this":[115],"end,":[116],"collected":[118],"417":[119],"publicly":[120],"datasets":[122],"25":[124],"human":[125],"14":[127],"mouse":[128],"Gene":[132],"Expression":[133],"Omnibus":[134],"database":[135],"use":[137],"develop":[140],"novel":[142],"pipeline":[143],"sequences":[147],"facilitating":[148],"in-depth":[149],"analyses":[150],"designed":[151],"reveal":[153],"microbial":[155,180],"profile":[156],"various":[158,184],"healthy":[163],"controls.":[164],"is":[166],"online":[169],"platform":[170],"allows":[172],"browse,":[175],"search,":[176],"visualize,":[177],"download":[179],"abundance":[181],"along":[186],"corresponding":[188],"analysis":[189],"results,":[190],"aimimg":[191],"at":[192],"providing":[193],"reference":[195],"research.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2022-10-04T00:00:00"}